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    Tada1 transcriptional adaptor 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360874, updated on 4-Jan-2025

    Summary

    Official Symbol
    Tada1provided by RGD
    Official Full Name
    transcriptional adaptor 1provided by RGD
    Primary source
    RGD:1306774
    See related
    EnsemblRapid:ENSRNOG00000003816 AllianceGenome:RGD:1306774
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Tada1l; RGD1306774
    Summary
    Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in cytosol; focal adhesion; and nucleoplasm. Predicted to be part of SAGA complex. Orthologous to human TADA1 (transcriptional adaptor 1). [provided by Alliance of Genome Resources, Jan 2025]
    Expression
    Biased expression in Thymus (RPKM 117.9), Lung (RPKM 100.5) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Tada1 in Genome Data Viewer
    Location:
    13q23
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (81165871..81180421)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (78632908..78646863)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (84588587..84602542)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene cold shock domain-containing protein E1-like Neighboring gene maelstrom spermatogenic transposon silencer Neighboring gene immunoglobulin-like domain containing receptor 2 Neighboring gene uncharacterized LOC120096307 Neighboring gene uncharacterized LOC120096308 Neighboring gene pogo transposable element derived with KRAB domain Neighboring gene flavin-containing monooxygenase 13

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Clone Names

    • MGC109458

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables protein binding PubMed 
    enables transcription coactivator activity  
    enables transcription coactivator activity  
    enables transcription coactivator activity  
    Component Evidence Code Pubs
    part_of SAGA complex  
    part_of SAGA complex  
    part_of SAGA complex  
    located_in cytosol  
    located_in cytosol  
    located_in focal adhesion  
    located_in focal adhesion  
    located_in nucleoplasm  
    located_in nucleoplasm  
    located_in nucleus  

    General protein information

    Preferred Names
    transcriptional adapter 1
    Names
    transcriptional adapter 1-like protein
    transcriptional adaptor 1 (HFI1 homolog, yeast) like
    transcriptional adaptor 1- like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037980.2NP_001033069.2  transcriptional adapter 1

      See identical proteins and their annotated locations for NP_001033069.2

      Status: PROVISIONAL

      Source sequence(s)
      BC158713
      UniProtKB/Swiss-Prot
      Q5BJQ7
      UniProtKB/TrEMBL
      A0A0H2UHC2, B0BN76
      Related
      ENSRNOP00000005090.6, ENSRNOT00000005090.9
      Conserved Domains (1) summary
      pfam12767
      Location:7193
      SAGA-Tad1; Transcriptional regulator of RNA polII, SAGA, subunit

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      81165871..81180421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039090914.2XP_038946842.1  transcriptional adapter 1 isoform X1

      Related
      ENSRNOP00000055484.3, ENSRNOT00000058689.6
      Conserved Domains (1) summary
      pfam12767
      Location:51106
      SAGA-Tad1; Transcriptional regulator of RNA polII, SAGA, subunit
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