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    LOC158434 uncharacterized LOC158434 [ Homo sapiens (human) ]

    Gene ID: 158434, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC158434
    Gene description
    uncharacterized LOC158434
    See related
    Ensembl:ENSG00000275465
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC158434 in Genome Data Viewer
    Location:
    9q22.32
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (96106661..96116411, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (108278012..108287762, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (98868943..98878693, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ERCC excision repair 6 like 2 Neighboring gene uncharacterized LOC105376159 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28649 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98788545-98789068 Neighboring gene uncharacterized LOC158435 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:98850190-98851389 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:98869639-98870212 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:98889065-98889595 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:98890980-98891503 Neighboring gene uncharacterized LOC112268039 Neighboring gene Sharpr-MPRA regulatory region 13927 Neighboring gene eukaryotic translation initiation factor 4B pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_132344.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK055173, AL449403
      Related
      ENST00000624497.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      96106661..96116411 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      108278012..108287762 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001256408.1: Suppressed sequence

      Description
      NM_001256408.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

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