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    asRNA:CR42871 antisense RNA:CR42871 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 10178937, updated on 11-Sep-2024

    Summary

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    Official Symbol
    asRNA:CR42871provided by FlyBase
    Official Full Name
    antisense RNA:CR42871provided by FlyBase
    Primary source
    FLYBASE:FBgn0265295
    Locus tag
    Dmel_CR42871
    See related
    AllianceGenome:FB:FBgn0265295
    Gene type
    ncRNA
    RNA name
    antisense_RNA
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BEST:LD13184; CR33944; CR42871; Dmel\CR42871; pncr014:3L
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    Genomic context

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    See asRNA:CR42871 in Genome Data Viewer
    Location:
    70C15-70C15; 3-41 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (14034531..14036836, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (14027631..14029936, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene PAX transcription activation domain interacting protein Neighboring gene endosulfine Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Heat shock protein 110 Neighboring gene Neuralized E3 ubiquitin protein ligase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster. Tupy JL, et al. Proc Natl Acad Sci U S A, 2005 Apr 12. PMID 15809421, Free PMC Article
    2. Exploring the correlation between deltamethrin stress and Keap1-Nrf2-ARE pathway from Drosophila melanogaster RNASeq data. Liu Y, et al. Genomics, 2020 Mar. PMID 31376529
    3. Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs. Wilk R, et al. Genes Dev, 2016 Mar 1. PMID 26944682, Free PMC Article
    4. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
    5. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    • alternate names: putative noncoding RNA 014:3L
    • asRNA:CR42871-RB; Dmel\asRNA:CR42871-RB; CR42871-RB; Dmel\CR42871-RB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      14034531..14036836 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_037749.3 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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