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    LINC01828 long intergenic non-protein coding RNA 1828 [ Homo sapiens (human) ]

    Gene ID: 102800447, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC01828provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1828provided by HGNC
    Primary source
    HGNC:HGNC:52634
    See related
    AllianceGenome:HGNC:52634
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01828 in Genome Data Viewer
    Location:
    2p14
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (67086446..67289244)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (67096010..67298956)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (67313578..67516376)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1799 Neighboring gene long intergenic non-protein coding RNA 1628 Neighboring gene uncharacterized LOC105374785 Neighboring gene HHc2:066104 enhancer downstream of MEIS1 Neighboring gene HHc2:066522 enhancer downstream of MEIS1 Neighboring gene long intergenic non-protein coding RNA 1829 Neighboring gene uncharacterized LOC101927661 Neighboring gene HHc2:066644 enhancer downstream of MEIS1 Neighboring gene HHc2:066683 enhancer downstream of MEIS1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:67556875-67557456 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:67558406-67558919 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:67559946-67560457 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:67560458-67560970 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:67561484-67561996 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:67583148-67583648 Neighboring gene uncharacterized LOC107985891 Neighboring gene ETAA1 activator of ATR kinase Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:67690923-67691503

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110564.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC023115, BC040863

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      67086446..67289244
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      67096010..67298956
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)