U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RAD54B RAD54 homolog B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 699516, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RAD54Bprovided by VGNC
    Official Full Name
    RAD54 homolog Bprovided by VGNC
    Primary source
    VGNC:VGNC:99473
    See related
    Ensembl:ENSMMUG00000005659
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RAD54B in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (94690366..94790735, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (92908181..93008494, complement)

    Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106999861 Neighboring gene transcription initiation factor IIA subunit 2 pseudogene Neighboring gene fibrinogen silencer binding protein Neighboring gene vir like m6A methyltransferase associated Neighboring gene ATP synthase subunit f, mitochondrial pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA translocase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in reciprocal meiotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA repair and recombination protein RAD54B

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041761.1 Reference Mmul_10 Primary Assembly

      Range
      94690366..94790735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001088870.4 → XP_001088870.1  DNA repair and recombination protein RAD54B isoform X1

      See identical proteins and their annotated locations for XP_001088870.1

      UniProtKB/TrEMBL
      F6VXV3, G7MZS3
      Related
      ENSMMUP00000007478.2, ENSMMUT00000007957.4
      Conserved Domains (4) summary
      cd00046
      Location:321 → 462
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:299 → 598
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:640 → 757
      Helicase_C; Helicase conserved C-terminal domain
      pfam11496
      Location:553 → 828
      HDA2-3; Class II histone deacetylase complex subunits 2 and 3

    2. XM_028852778.1 → XP_028708611.1  DNA repair and recombination protein RAD54B isoform X2

      Conserved Domains (2) summary
      COG0553
      Location:112 → 630
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18066
      Location:112 → 346
      DEXHc_RAD54B; DEXH-box helicase domain of RAD54B

    3. XM_015145702.2 → XP_015001188.1  DNA repair and recombination protein RAD54B isoform X3

      UniProtKB/TrEMBL
      A0A1D5RCC3
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials