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    CASC3 CASC3 exon junction complex subunit [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 699712, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CASC3provided by VGNC
    Official Full Name
    CASC3 exon junction complex subunitprovided by VGNC
    Primary source
    VGNC:VGNC:99126
    See related
    Ensembl:ENSMMUG00000045187
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CASC3 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (51282241..51317930)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (45953368..45987716)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor subfamily 1 group D member 1 Neighboring gene MSL complex subunit 1 Neighboring gene Rap guanine nucleotide exchange factor like 1 Neighboring gene uncharacterized LOC114673149 Neighboring gene WAS/WASL interacting protein family member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of exon-exon junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CASC3
    Names
    cancer susceptibility 3
    cancer susceptibility candidate 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001260566.1 → NP_001247495.1  protein CASC3

      See identical proteins and their annotated locations for NP_001247495.1

      Status: PROVISIONAL

      Source sequence(s)
      JV046462
      UniProtKB/TrEMBL
      A0A1D5QGZ6, A0A1D5R604, H9FRD9
      Related
      ENSMMUP00000055742.1, ENSMMUT00000078868.2
      Conserved Domains (1) summary
      smart01044
      Location:146 → 248
      Btz; CASC3/Barentsz eIF4AIII binding

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      51282241..51317930
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015119568.2 → XP_014975054.1  protein CASC3 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QGZ6, F6XDK9
      Related
      ENSMMUP00000029378.4, ENSMMUT00000031397.4
      Conserved Domains (2) summary
      smart01044
      Location:146 → 248
      Btz; CASC3/Barentsz eIF4AIII binding
      pfam11018
      Location:549 → 670
      Cuticle_3; Pupal cuticle protein C1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.