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    TCF3 transcription factor 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 721325, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TCF3provided by VGNC
    Official Full Name
    transcription factor 3provided by VGNC
    Primary source
    VGNC:VGNC:78287
    See related
    Ensembl:ENSMMUG00000009017
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TCF3 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (1410565..1456999, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (1421409..1469697, complement)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene methyl-CpG binding domain protein 3 Neighboring gene ubiquinol-cytochrome c reductase, complex III subunit XI Neighboring gene one cut homeobox 3 Neighboring gene ATPase phospholipid transporting 8B3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immunoglobulin V(D)J recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor E2-alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      1410565..1456999 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028838652.1 → XP_028694485.1  transcription factor E2-alpha isoform X3

      UniProtKB/TrEMBL
      A0A1D5R2L7, H9FZ11
      Related
      ENSMMUP00000054552.2, ENSMMUT00000063083.2
      Conserved Domains (2) summary
      smart00353
      Location:552 → 605
      HLH; helix loop helix domain
      pfam02463
      Location:496 → 622
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_028838651.1 → XP_028694484.1  transcription factor E2-alpha isoform X2

      UniProtKB/TrEMBL
      H9EVE7
      Conserved Domains (1) summary
      smart00353
      Location:554 → 607
      HLH; helix loop helix domain

    3. XM_028838649.1 → XP_028694482.1  transcription factor E2-alpha isoform X1

      UniProtKB/TrEMBL
      A0A1D5RL58, H9EVE7
      Related
      ENSMMUP00000063283.1, ENSMMUT00000105809.1
      Conserved Domains (1) summary
      smart00353
      Location:555 → 608
      HLH; helix loop helix domain

    4. XM_028838655.1 → XP_028694488.1  transcription factor E2-alpha isoform X6

      UniProtKB/TrEMBL
      A0A1D5QKD4

    5. XM_015122375.2 → XP_014977861.2  transcription factor E2-alpha isoform X4

      UniProtKB/TrEMBL
      H9FZ11
      Conserved Domains (2) summary
      smart00353
      Location:551 → 604
      HLH; helix loop helix domain
      pfam02463
      Location:496 → 621
      SMC_N; RecF/RecN/SMC N terminal domain

    6. XM_015122370.2 → XP_014977856.2  transcription factor E2-alpha isoform X1

      UniProtKB/TrEMBL
      A0A1D5RL58, H9EVE7
      Related
      ENSMMUP00000011814.4, ENSMMUT00000012600.4
      Conserved Domains (1) summary
      smart00353
      Location:555 → 608
      HLH; helix loop helix domain

    7. XM_028838650.1 → XP_028694483.1  transcription factor E2-alpha isoform X2

      UniProtKB/TrEMBL
      H9EVE7
      Conserved Domains (1) summary
      smart00353
      Location:554 → 607
      HLH; helix loop helix domain

    8. XM_015122373.2 → XP_014977859.2  transcription factor E2-alpha isoform X3

      UniProtKB/TrEMBL
      A0A1D5R2L7, H9FZ11
      Related
      ENSMMUP00000011812.4, ENSMMUT00000012598.4
      Conserved Domains (2) summary
      smart00353
      Location:552 → 605
      HLH; helix loop helix domain
      pfam02463
      Location:496 → 622
      SMC_N; RecF/RecN/SMC N terminal domain

    9. XM_028838654.1 → XP_028694487.1  transcription factor E2-alpha isoform X5

      UniProtKB/TrEMBL
      H9FZ11
      Conserved Domains (2) summary
      smart00353
      Location:501 → 554
      HLH; helix loop helix domain
      pfam02463
      Location:445 → 571
      SMC_N; RecF/RecN/SMC N terminal domain

    10. XM_015122374.2 → XP_014977860.2  transcription factor E2-alpha isoform X4

      UniProtKB/TrEMBL
      H9FZ11
      Conserved Domains (2) summary
      smart00353
      Location:551 → 604
      HLH; helix loop helix domain
      pfam02463
      Location:496 → 621
      SMC_N; RecF/RecN/SMC N terminal domain

    11. XM_015122369.2 → XP_014977855.2  transcription factor E2-alpha isoform X1

      UniProtKB/TrEMBL
      A0A1D5RL58, H9EVE7
      Related
      ENSMMUP00000061053.2, ENSMMUT00000063460.2
      Conserved Domains (1) summary
      smart00353
      Location:555 → 608
      HLH; helix loop helix domain

    12. XM_015122372.2 → XP_014977858.2  transcription factor E2-alpha isoform X3

      UniProtKB/TrEMBL
      A0A1D5R2L7, H9FZ11
      Conserved Domains (2) summary
      smart00353
      Location:552 → 605
      HLH; helix loop helix domain
      pfam02463
      Location:496 → 622
      SMC_N; RecF/RecN/SMC N terminal domain

    13. XM_028838656.1 → XP_028694489.1  transcription factor E2-alpha isoform X6

      UniProtKB/TrEMBL
      A0A1D5QKD4
      Related
      ENSMMUP00000048507.2, ENSMMUT00000058560.2

    14. XM_028838657.1 → XP_028694490.1  transcription factor E2-alpha isoform X6

      UniProtKB/TrEMBL
      A0A1D5QKD4

    RNA

    1. XR_003724834.1 RNA Sequence

    2. XR_001441209.2 RNA Sequence

    3. XR_001441208.2 RNA Sequence

    4. XR_001441207.2 RNA Sequence

    5. XR_001441210.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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