U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CACNA1B calcium voltage-gated channel subunit alpha1 B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 721452, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CACNA1Bprovided by VGNC
    Official Full Name
    calcium voltage-gated channel subunit alpha1 Bprovided by VGNC
    Primary source
    VGNC:VGNC:70499
    See related
    Ensembl:ENSMMUG00000009187
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CACNA1B in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    51
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (58487..317034, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (88076..258884, complement)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene tubulin beta-8 chain-like Neighboring gene forkhead box protein H1-like Neighboring gene euchromatic histone lysine methyltransferase 1 Neighboring gene protein GVQW1-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables high voltage-gated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuronal cell body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of voltage-gated calcium channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    voltage-dependent N-type calcium channel subunit alpha-1B
    Names
    calcium channel, voltage-dependent, L type, alpha 1B subunit

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      58487..317034 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028834494.1 → XP_028690327.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X2

      Conserved Domains (5) summary
      PRK12678
      Location:814 → 1003
      PRK12678; transcription termination factor Rho; Provisional
      pfam15449
      Location:2010 → 2255
      Retinal; Retinal protein
      pfam00520
      Location:1495 → 1744
      Ion_trans; Ion transport protein
      pfam08763
      Location:1818 → 1892
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16905
      Location:1745 → 1816
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    2. XM_028834495.1 → XP_028690328.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X3

      Conserved Domains (5) summary
      PRK12678
      Location:810 → 1010
      PRK12678; transcription termination factor Rho; Provisional
      pfam15449
      Location:2010 → 2255
      Retinal; Retinal protein
      pfam00520
      Location:1495 → 1744
      Ion_trans; Ion transport protein
      pfam08763
      Location:1818 → 1892
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16905
      Location:1745 → 1816
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    3. XM_028834497.1 → XP_028690330.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X5

      Conserved Domains (5) summary
      PRK12678
      Location:815 → 1004
      PRK12678; transcription termination factor Rho; Provisional
      pfam15449
      Location:2007 → 2252
      Retinal; Retinal protein
      pfam00520
      Location:1492 → 1741
      Ion_trans; Ion transport protein
      pfam08763
      Location:1815 → 1889
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16905
      Location:1742 → 1813
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    4. XM_028834493.1 → XP_028690326.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X1

      Conserved Domains (5) summary
      PRK12678
      Location:815 → 1004
      PRK12678; transcription termination factor Rho; Provisional
      pfam15449
      Location:2011 → 2256
      Retinal; Retinal protein
      pfam00520
      Location:1496 → 1745
      Ion_trans; Ion transport protein
      pfam08763
      Location:1819 → 1893
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16905
      Location:1746 → 1817
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    5. XM_028834500.1 → XP_028690333.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X8

      Conserved Domains (5) summary
      PRK12678
      Location:789 → 989
      PRK12678; transcription termination factor Rho; Provisional
      pfam15449
      Location:1989 → 2234
      Retinal; Retinal protein
      pfam00520
      Location:1474 → 1723
      Ion_trans; Ion transport protein
      pfam08763
      Location:1797 → 1871
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16905
      Location:1724 → 1795
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    6. XM_028834499.1 → XP_028690332.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X7

      Conserved Domains (5) summary
      PRK12678
      Location:790 → 990
      PRK12678; transcription termination factor Rho; Provisional
      pfam15449
      Location:1990 → 2235
      Retinal; Retinal protein
      pfam00520
      Location:1475 → 1724
      Ion_trans; Ion transport protein
      pfam08763
      Location:1798 → 1872
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16905
      Location:1725 → 1796
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    7. XM_028834498.1 → XP_028690331.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X6

      Conserved Domains (5) summary
      PRK12678
      Location:815 → 1004
      PRK12678; transcription termination factor Rho; Provisional
      pfam15449
      Location:2005 → 2250
      Retinal; Retinal protein
      pfam00520
      Location:1492 → 1739
      Ion_trans; Ion transport protein
      pfam08763
      Location:1813 → 1887
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16905
      Location:1740 → 1811
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    8. XM_028834503.1 → XP_028690336.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X11

      Conserved Domains (5) summary
      PRK12678
      Location:344 → 533
      PRK12678; transcription termination factor Rho; Provisional
      pfam15449
      Location:1540 → 1785
      Retinal; Retinal protein
      pfam00520
      Location:1025 → 1274
      Ion_trans; Ion transport protein
      pfam08763
      Location:1348 → 1422
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16905
      Location:1275 → 1346
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    9. XM_028834501.1 → XP_028690334.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X9

      UniProtKB/TrEMBL
      F7HMC6
      Related
      ENSMMUP00000012043.4, ENSMMUT00000012846.4
      Conserved Domains (5) summary
      PRK12678
      Location:789 → 989
      PRK12678; transcription termination factor Rho; Provisional
      pfam15449
      Location:1985 → 2230
      Retinal; Retinal protein
      pfam00520
      Location:1470 → 1719
      Ion_trans; Ion transport protein
      pfam08763
      Location:1793 → 1867
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16905
      Location:1720 → 1791
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    10. XM_028834496.1 → XP_028690329.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X4

      Conserved Domains (5) summary
      PRK12678
      Location:815 → 1004
      PRK12678; transcription termination factor Rho; Provisional
      pfam15449
      Location:2009 → 2254
      Retinal; Retinal protein
      pfam00520
      Location:1496 → 1743
      Ion_trans; Ion transport protein
      pfam08763
      Location:1817 → 1891
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16905
      Location:1744 → 1815
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    11. XM_028834502.1 → XP_028690335.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X10

      Conserved Domains (5) summary
      PRK12678
      Location:789 → 989
      PRK12678; transcription termination factor Rho; Provisional
      pfam15449
      Location:1983 → 2228
      Retinal; Retinal protein
      pfam00520
      Location:1470 → 1717
      Ion_trans; Ion transport protein
      pfam08763
      Location:1791 → 1865
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16905
      Location:1718 → 1789
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    12. XM_028834510.1 → XP_028690343.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X16

      Conserved Domains (5) summary
      PHA03307
      Location:1901 → 2186
      PHA03307; transcriptional regulator ICP4; Provisional
      PRK12678
      Location:789 → 989
      PRK12678; transcription termination factor Rho; Provisional
      pfam00520
      Location:1470 → 1719
      Ion_trans; Ion transport protein
      pfam08763
      Location:1793 → 1867
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16905
      Location:1720 → 1791
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    13. XM_028834509.1 → XP_028690342.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X15

      Conserved Domains (2) summary
      PRK12678
      Location:811 → 1011
      PRK12678; transcription termination factor Rho; Provisional
      pfam00520
      Location:94 → 367
      Ion_trans; Ion transport protein

    14. XM_028834506.1 → XP_028690339.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X14

      Conserved Domains (3) summary
      PRK12678
      Location:811 → 1011
      PRK12678; transcription termination factor Rho; Provisional
      pfam00520
      Location:1492 → 1739
      Ion_trans; Ion transport protein
      pfam16905
      Location:1740 → 1793
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    15. XM_028834505.1 → XP_028690338.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X13

      Conserved Domains (3) summary
      PRK12678
      Location:811 → 1011
      PRK12678; transcription termination factor Rho; Provisional
      pfam00520
      Location:1496 → 1743
      Ion_trans; Ion transport protein
      pfam16905
      Location:1744 → 1797
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    16. XM_028834504.1 → XP_028690337.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X12

      Conserved Domains (3) summary
      PRK12678
      Location:811 → 1011
      PRK12678; transcription termination factor Rho; Provisional
      pfam00520
      Location:1496 → 1745
      Ion_trans; Ion transport protein
      pfam16905
      Location:1746 → 1799
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    17. XM_028834507.1 → XP_028690340.1  voltage-dependent N-type calcium channel subunit alpha-1B isoform X15

      Conserved Domains (2) summary
      PRK12678
      Location:811 → 1011
      PRK12678; transcription termination factor Rho; Provisional
      pfam00520
      Location:94 → 367
      Ion_trans; Ion transport protein

    RNA

    1. XR_003723073.1 RNA Sequence

    2. XR_003723074.1 RNA Sequence

    3. XR_003723075.1 RNA Sequence

    4. XR_003723072.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.