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    IGDCC3 immunoglobulin superfamily DCC subclass member 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709239, updated on 17-Aug-2024

    Summary

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    Official Symbol
    IGDCC3provided by VGNC
    Official Full Name
    immunoglobulin superfamily DCC subclass member 3provided by VGNC
    Primary source
    VGNC:VGNC:73583
    See related
    Ensembl:ENSMMUG00000021783
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See IGDCC3 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (41870736..41922625, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (42007870..42057394, complement)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene U5 spliceosomal RNA Neighboring gene U5 spliceosomal RNA Neighboring gene immunoglobulin superfamily DCC subclass member 4 Neighboring gene uncharacterized LOC114679426 Neighboring gene dipeptidyl peptidase 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    immunoglobulin superfamily DCC subclass member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      41870736..41922625 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015142491.2 → XP_014997977.2  immunoglobulin superfamily DCC subclass member 3 isoform X2

      UniProtKB/TrEMBL
      F7DED1, G7MXU6
      Related
      ENSMMUP00000028688.3, ENSMMUT00000030653.4
      Conserved Domains (5) summary
      cd00063
      Location:428 → 521
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:526 → 607
      fn3; Fibronectin type III domain
      pfam07679
      Location:335 → 421
      I-set; Immunoglobulin I-set domain
      pfam13927
      Location:242 → 313
      Ig_3; Immunoglobulin domain
      cl11960
      Location:48 → 139
      Ig; Immunoglobulin domain

    2. XM_015142493.2 → XP_014997979.2  immunoglobulin superfamily DCC subclass member 3 isoform X1

      UniProtKB/TrEMBL
      G7MXU6
      Conserved Domains (5) summary
      cd00063
      Location:328 → 421
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:426 → 507
      fn3; Fibronectin type III domain
      pfam07679
      Location:235 → 321
      I-set; Immunoglobulin I-set domain
      pfam13927
      Location:142 → 213
      Ig_3; Immunoglobulin domain
      cl11960
      Location:47 → 131
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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