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    RBM39 RNA binding motif protein 39 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 704198, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RBM39provided by VGNC
    Official Full Name
    RNA binding motif protein 39provided by VGNC
    Primary source
    VGNC:VGNC:98434
    See related
    Ensembl:ENSMMUG00000031284
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RBM39 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (70925062..70965844, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (28372824..28414250)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene copine 1 Neighboring gene RNA binding motif protein 12 Neighboring gene NFS1 cysteine desulfurase Neighboring gene reactive oxygen species modulator 1 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC114670473 Neighboring gene ribosome production factor 2 homolog pseudogene Neighboring gene 60S ribosomal protein L37

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein 39

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      70925062..70965844 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015149105.2 → XP_015004591.1  RNA-binding protein 39 isoform X1

      UniProtKB/TrEMBL
      F7CGM8, H9EMA5
      Related
      ENSMMUP00000060875.1, ENSMMUT00000066852.2
      Conserved Domains (1) summary
      TIGR01622
      Location:46 → 518
      SF-CC1; splicing factor, CC1-like family

    2. XM_015149107.2 → XP_015004593.1  RNA-binding protein 39 isoform X2

      UniProtKB/TrEMBL
      F7CGM8, H9EMA4
      Related
      ENSMMUP00000072044.1, ENSMMUT00000108630.1
      Conserved Domains (1) summary
      TIGR01622
      Location:46 → 512
      SF-CC1; splicing factor, CC1-like family

    3. XM_015149109.2 → XP_015004595.1  RNA-binding protein 39 isoform X4

      UniProtKB/TrEMBL
      A0A5F8A156, F7CGM8
      Related
      ENSMMUP00000070660.1, ENSMMUT00000106470.1
      Conserved Domains (1) summary
      TIGR01622
      Location:46 → 490
      SF-CC1; splicing factor, CC1-like family

    4. XM_015149108.2 → XP_015004594.1  RNA-binding protein 39 isoform X3

      UniProtKB/TrEMBL
      F7CGM8
      Conserved Domains (1) summary
      TIGR01622
      Location:46 → 496
      SF-CC1; splicing factor, CC1-like family

    5. XM_028828377.1 → XP_028684210.1  RNA-binding protein 39 isoform X5

      Conserved Domains (1) summary
      TIGR01622
      Location:1 → 361
      SF-CC1; splicing factor, CC1-like family

    6. XM_028828376.1 → XP_028684209.1  RNA-binding protein 39 isoform X5

      Conserved Domains (1) summary
      TIGR01622
      Location:1 → 361
      SF-CC1; splicing factor, CC1-like family

    7. XM_028828379.1 → XP_028684212.1  RNA-binding protein 39 isoform X5

      Conserved Domains (1) summary
      TIGR01622
      Location:1 → 361
      SF-CC1; splicing factor, CC1-like family

    8. XM_028828375.1 → XP_028684208.1  RNA-binding protein 39 isoform X5

      Conserved Domains (1) summary
      TIGR01622
      Location:1 → 361
      SF-CC1; splicing factor, CC1-like family

    9. XM_028828374.1 → XP_028684207.1  RNA-binding protein 39 isoform X5

      Conserved Domains (1) summary
      TIGR01622
      Location:1 → 361
      SF-CC1; splicing factor, CC1-like family

    10. XM_028828378.1 → XP_028684211.1  RNA-binding protein 39 isoform X5

      Conserved Domains (1) summary
      TIGR01622
      Location:1 → 361
      SF-CC1; splicing factor, CC1-like family
    Nucleotide Protein
    Heading Accession and Version

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