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    HBP1 HMG-box transcription factor 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 699237, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HBP1provided by VGNC
    Official Full Name
    HMG-box transcription factor 1provided by VGNC
    Primary source
    VGNC:VGNC:73218
    See related
    Ensembl:ENSMMUG00000015409
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See HBP1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (133483000..133516636)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (132586962..132620550)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma Neighboring gene protein kinase cAMP-dependent type II regulatory subunit beta Neighboring gene uncharacterized LOC114677009 Neighboring gene component of oligomeric golgi complex 5 Neighboring gene lactate dehydrogenase B pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    HMG box-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261020.1 → NP_001247949.1  HMG box-containing protein 1

      See identical proteins and their annotated locations for NP_001247949.1

      Status: PROVISIONAL

      Source sequence(s)
      JV046752
      UniProtKB/TrEMBL
      G7MM36, I0FQU7
      Related
      ENSMMUP00000068379.1, ENSMMUT00000089369.1
      Conserved Domains (2) summary
      smart00536
      Location:214 → 340
      AXH; domain in Ataxins and HMG containing proteins
      cd01388
      Location:433 → 504
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      133483000..133516636
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015134601.2 → XP_014990087.1  HMG box-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      G7MM36
      Conserved Domains (2) summary
      smart00536
      Location:224 → 350
      AXH; domain in Ataxins and HMG containing proteins
      cd01388
      Location:443 → 514
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

    2. XM_015134610.2 → XP_014990096.1  HMG box-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      G7MM36, I0FQU7
      Conserved Domains (2) summary
      smart00536
      Location:214 → 340
      AXH; domain in Ataxins and HMG containing proteins
      cd01388
      Location:433 → 504
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

    3. XM_015134600.2 → XP_014990086.1  HMG box-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      F6Q4Y7, G7MM36
      Related
      ENSMMUP00000020205.4, ENSMMUT00000021601.4
      Conserved Domains (2) summary
      smart00536
      Location:318 → 444
      AXH; domain in Ataxins and HMG containing proteins
      cd01388
      Location:537 → 608
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

    4. XM_015134607.2 → XP_014990093.1  HMG box-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      G7MM36, I0FQU7
      Conserved Domains (2) summary
      smart00536
      Location:214 → 340
      AXH; domain in Ataxins and HMG containing proteins
      cd01388
      Location:433 → 504
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

    5. XM_028844848.1 → XP_028700681.1  HMG box-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      G7MM36, I0FQU7
      Related
      ENSMMUP00000066880.1, ENSMMUT00000092839.1
      Conserved Domains (2) summary
      smart00536
      Location:214 → 340
      AXH; domain in Ataxins and HMG containing proteins
      cd01388
      Location:433 → 504
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

    6. XM_015134609.2 → XP_014990095.1  HMG box-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      G7MM36, I0FQU7
      Conserved Domains (2) summary
      smart00536
      Location:214 → 340
      AXH; domain in Ataxins and HMG containing proteins
      cd01388
      Location:433 → 504
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

    7. XM_015134602.2 → XP_014990088.1  HMG box-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      G7MM36, I0FQU7
      Conserved Domains (2) summary
      smart00536
      Location:214 → 340
      AXH; domain in Ataxins and HMG containing proteins
      cd01388
      Location:433 → 504
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    Nucleotide Protein
    Heading Accession and Version

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