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    CHORDC1 cysteine and histidine rich domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 694312, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CHORDC1provided by VGNC
    Official Full Name
    cysteine and histidine rich domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:100912
    Locus tag
    EGK_06763
    See related
    Ensembl:ENSMMUG00000005209
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CHORDC1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (83333463..83356553, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (82626418..82655642, complement)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing protein 49D Neighboring gene N-acetylated alpha-linked acidic dipeptidase 2 Neighboring gene oxysterol-binding protein-related protein 9 pseudogene Neighboring gene 40S ribosomal protein S13-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in centrosome duplication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine and histidine-rich domain-containing protein 1
    Names
    cysteine and histidine-rich domain (CHORD) containing 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257756.1 → NP_001244685.1  cysteine and histidine-rich domain-containing protein 1

      See identical proteins and their annotated locations for NP_001244685.1

      Status: PROVISIONAL

      Source sequence(s)
      JU322408
      UniProtKB/TrEMBL
      A0A1D5R698, A0A5K1V678, A0A663DH10, A0A8J8XSD7, F7CMA7, G7NBF7
      Related
      ENSMMUP00000055836.2, ENSMMUT00000054979.2
      Conserved Domains (2) summary
      cd06488
      Location:230 → 316
      p23_melusin_like; p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta ...
      pfam04968
      Location:3 → 64
      CHORD

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      83333463..83356553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028832509.1 → XP_028688342.1  cysteine and histidine-rich domain-containing protein 1 isoform X1

      Conserved Domains (2) summary
      cd06488
      Location:116 → 202
      p23_melusin_like; p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta ...
      pfam04968
      Location:41 → 102
      CHORD
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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