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    ZGPAT zinc finger CCCH-type and G-patch domain containing [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 719499, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZGPATprovided by VGNC
    Official Full Name
    zinc finger CCCH-type and G-patch domain containingprovided by VGNC
    Primary source
    VGNC:VGNC:98469
    See related
    Ensembl:ENSMMUG00000000171
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ZGPAT in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (98917626..98948579)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (566271..594570, complement)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene regulator of telomere elongation helicase 1 Neighboring gene TNF receptor superfamily member 6b Neighboring gene ADP ribosylation factor related protein 1 Neighboring gene LIM domain-containing protein A-like Neighboring gene SLC2A4 regulator Neighboring gene Lck interacting transmembrane adaptor 1 Neighboring gene zinc finger and BTB domain containing 46 Neighboring gene uncharacterized LOC107000330

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCCH-type with G patch domain-containing protein
    Names
    zinc finger, CCCH-type with G patch domain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      98917626..98948579
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015148589.2 → XP_015004075.2  zinc finger CCCH-type with G patch domain-containing protein isoform X1

      UniProtKB/TrEMBL
      F7GUR6, H9G0U7
      Related
      ENSMMUP00000062558.1, ENSMMUT00000102126.1
      Conserved Domains (4) summary
      cd04508
      Location:220 → 250
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      smart00356
      Location:177 → 198
      ZnF_C3H1; zinc finger
      pfam06008
      Location:399 → 497
      Laminin_I; Laminin Domain I
      pfam01585
      Location:312 → 353
      G-patch; G-patch domain

    2. XM_015148590.2 → XP_015004076.2  zinc finger CCCH-type with G patch domain-containing protein isoform X2

      UniProtKB/TrEMBL
      H9G0U7
      Conserved Domains (4) summary
      cd04508
      Location:220 → 250
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      smart00356
      Location:177 → 198
      ZnF_C3H1; zinc finger
      pfam06008
      Location:392 → 490
      Laminin_I; Laminin Domain I
      pfam01585
      Location:305 → 346
      G-patch; G-patch domain
    Nucleotide Protein
    Heading Accession and Version

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