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    GAR1 GAR1 ribonucleoprotein [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 697982, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GAR1provided by VGNC
    Official Full Name
    GAR1 ribonucleoproteinprovided by VGNC
    Primary source
    VGNC:VGNC:100230
    See related
    Ensembl:ENSMMUG00000021225
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See GAR1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (108164457..108174049)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (108707226..108716821)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene phospholipase A2 group XIIA Neighboring gene complement factor I Neighboring gene uncharacterized LOC114678379 Neighboring gene uncharacterized LOC106998466 Neighboring gene retinal pigment epithelium-derived rhodopsin homolog Neighboring gene leucine rich repeat, Ig-like and transmembrane domains 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables box H/ACA snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in snoRNA guided rRNA pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box H/ACA snoRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    H/ACA ribonucleoprotein complex subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      108164457..108174049
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015139028.2 → XP_014994514.1  H/ACA ribonucleoprotein complex subunit 1

      UniProtKB/TrEMBL
      A0A5K1VBP4, G7MTM4
      Related
      ENSMMUP00000079712.1, ENSMMUT00000109016.1
      Conserved Domains (1) summary
      pfam04410
      Location:62 → 159
      Gar1; Gar1/Naf1 RNA binding region

    2. XM_015139029.2 → XP_014994515.1  H/ACA ribonucleoprotein complex subunit 1

      UniProtKB/TrEMBL
      A0A5K1VBP4, G7MTM4
      Related
      ENSMMUP00000027947.4, ENSMMUT00000029864.4
      Conserved Domains (1) summary
      pfam04410
      Location:62 → 159
      Gar1; Gar1/Naf1 RNA binding region

    3. XM_015139031.2 → XP_014994517.1  H/ACA ribonucleoprotein complex subunit 1

      UniProtKB/TrEMBL
      A0A5K1VBP4, G7MTM4
      Conserved Domains (1) summary
      pfam04410
      Location:62 → 159
      Gar1; Gar1/Naf1 RNA binding region

    4. XM_002808419.3 → XP_002808465.2  H/ACA ribonucleoprotein complex subunit 1

      UniProtKB/TrEMBL
      A0A5K1VBP4, G7MTM4
      Related
      ENSMMUP00000080046.1, ENSMMUT00000106822.1
      Conserved Domains (1) summary
      pfam04410
      Location:62 → 159
      Gar1; Gar1/Naf1 RNA binding region
    Nucleotide Protein
    Heading Accession and Version

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