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    SMC4 structural maintenance of chromosomes 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702615, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SMC4provided by VGNC
    Official Full Name
    structural maintenance of chromosomes 4provided by VGNC
    Primary source
    VGNC:VGNC:77699
    See related
    Ensembl:ENSMMUG00000017291
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    SMC4L1
    Orthologs
    human mouse all
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    Genomic context

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    See SMC4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (62673330..62709908)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (134276995..134313905, complement)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene chromosome 2 C3orf80 homolog Neighboring gene intraflagellar transport 80 Neighboring gene 60S ribosomal protein L35a pseudogene Neighboring gene microRNA mir-16-2 Neighboring gene microRNA mir-15b Neighboring gene signal peptidase complex subunit 2-like Neighboring gene tripartite motif containing 59 Neighboring gene U7 small nuclear RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitotic chromosome condensation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    structural maintenance of chromosomes protein 4
    Names
    SMC4 structural maintenance of chromosomes 4-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261676.1 → NP_001248605.1  structural maintenance of chromosomes protein 4

      See identical proteins and their annotated locations for NP_001248605.1

      Status: PROVISIONAL

      Source sequence(s)
      JV045828
      UniProtKB/TrEMBL
      F7HUA3, G7MJE2, I0FN73
      Related
      ENSMMUP00000022753.4, ENSMMUT00000024310.4
      Conserved Domains (2) summary
      PHA03247
      Location:2 → 58
      PHA03247; large tegument protein UL36; Provisional
      pfam02463
      Location:82 → 1273
      SMC_N; RecF/RecN/SMC N terminal domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      62673330..62709908
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015131709.2 → XP_014987195.1  structural maintenance of chromosomes protein 4 isoform X2

      UniProtKB/TrEMBL
      G7MJE2
      Conserved Domains (3) summary
      cd03274
      Location:10 → 169
      ABC_SMC4_euk; ATP-binding cassette domain of eukaryotic SMC4 proteins
      smart00968
      Location:541 → 655
      SMC_hinge; SMC proteins Flexible Hinge Domain
      pfam02463
      Location:11 → 1202
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_028843195.1 → XP_028699028.1  structural maintenance of chromosomes protein 4 isoform X1

      UniProtKB/TrEMBL
      F7HUA3, G7MJE2, I0FN73
      Conserved Domains (2) summary
      PHA03247
      Location:2 → 58
      PHA03247; large tegument protein UL36; Provisional
      pfam02463
      Location:82 → 1273
      SMC_N; RecF/RecN/SMC N terminal domain

    3. XM_015131710.2 → XP_014987196.1  structural maintenance of chromosomes protein 4 isoform X3

      UniProtKB/TrEMBL
      G7MJE2
      Conserved Domains (3) summary
      cd03274
      Location:945 → 1039
      ABC_SMC4_euk; ATP-binding cassette domain of eukaryotic SMC4 proteins
      smart00968
      Location:377 → 491
      SMC_hinge; SMC proteins Flexible Hinge Domain
      pfam02463
      Location:1 → 1038
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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