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    PRDM6 PR/SET domain 6 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 703499, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PRDM6provided by VGNC
    Official Full Name
    PR/SET domain 6provided by VGNC
    Primary source
    VGNC:VGNC:110444
    See related
    Ensembl:ENSMMUG00000052656
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PRDM6 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (120610618..120715378)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (120529054..120632835)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114678890 Neighboring gene uncharacterized LOC114678891 Neighboring gene uncharacterized LOC114678892 Neighboring gene small ubiquitin-related modifier 1 pseudogene Neighboring gene centrosomal protein 120

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative histone-lysine N-methyltransferase PRDM6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      120610618..120715378
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028849695.1 → XP_028705528.1  putative histone-lysine N-methyltransferase PRDM6

      UniProtKB/TrEMBL
      A0A5F8AG55
      Related
      ENSMMUP00000076897.1, ENSMMUT00000091620.1
      Conserved Domains (4) summary
      sd00017
      Location:501 → 521
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19191
      Location:242 → 370
      PR-SET_PRDM6; PR-SET domain found in PR domain zinc finger protein 6 (PRDM6) and similar proteins
      pfam13465
      Location:542 → 566
      zf-H2C2_2; Zinc-finger double domain
      cd20908
      Location:525 → 592
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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