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    LARP1B La ribonucleoprotein 1B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 693747, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LARP1Bprovided by VGNC
    Official Full Name
    La ribonucleoprotein 1Bprovided by VGNC
    Primary source
    VGNC:VGNC:74115
    See related
    Ensembl:ENSMMUG00000021347
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    LARP2
    Orthologs
    human mouse all
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    Genomic context

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    See LARP1B in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (125841621..125996380)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (127390421..127545525)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene polo like kinase 4 Neighboring gene major facilitator superfamily domain containing 8 Neighboring gene abhydrolase domain containing 18 Neighboring gene 60S ribosomal protein L15-like Neighboring gene fos-related antigen 1 pseudogene Neighboring gene uncharacterized LOC114678394 Neighboring gene progesterone receptor membrane component 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA cap binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA stabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    la-related protein 1B
    Names
    La ribonucleoprotein domain family member 1B
    La ribonucleoprotein domain family, member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      125841621..125996380
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015139203.2 → XP_014994689.1  la-related protein 1B isoform X3

      UniProtKB/TrEMBL
      F7DKZ1, G7MRZ1
      Related
      ENSMMUP00000028120.2, ENSMMUT00000030048.4
      Conserved Domains (2) summary
      smart00684
      Location:744 → 782
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      cl02755
      Location:216 → 288
      LAM; LA motif RNA-binding domain

    2. XM_015139202.2 → XP_014994688.1  la-related protein 1B isoform X3

      UniProtKB/TrEMBL
      F7DKZ1, G7MRZ1
      Conserved Domains (2) summary
      smart00684
      Location:744 → 782
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      cl02755
      Location:216 → 288
      LAM; LA motif RNA-binding domain

    3. XM_015139200.2 → XP_014994686.1  la-related protein 1B isoform X3

      UniProtKB/TrEMBL
      F7DKZ1, G7MRZ1
      Conserved Domains (2) summary
      smart00684
      Location:744 → 782
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      cl02755
      Location:216 → 288
      LAM; LA motif RNA-binding domain

    4. XM_015139208.2 → XP_014994694.1  la-related protein 1B isoform X9

      UniProtKB/TrEMBL
      F7DGW7
      Conserved Domains (1) summary
      cl02755
      Location:216 → 288
      LAM; LA motif RNA-binding domain

    5. XM_015139209.2 → XP_014994695.1  la-related protein 1B isoform X10

      UniProtKB/TrEMBL
      A0A1D5QPS2
      Related
      ENSMMUP00000050049.2, ENSMMUT00000061453.2
      Conserved Domains (2) summary
      COG5193
      Location:110 → 280
      LHP1; La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
      cl02755
      Location:216 → 288
      LAM; LA motif RNA-binding domain

    6. XM_015139197.2 → XP_014994683.1  la-related protein 1B isoform X1

      UniProtKB/TrEMBL
      F7DKZ1, G7MRZ1
      Conserved Domains (2) summary
      smart00684
      Location:946 → 984
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      cd08038
      Location:418 → 490
      LARP_2; La RNA-binding domain of La-related protein 2

    7. XM_015139198.2 → XP_014994684.1  la-related protein 1B isoform X2

      UniProtKB/TrEMBL
      F7DKZ1, G7MRZ1
      Conserved Domains (2) summary
      smart00684
      Location:938 → 976
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      cd08038
      Location:418 → 490
      LARP_2; La RNA-binding domain of La-related protein 2

    8. XM_028848768.1 → XP_028704601.1  la-related protein 1B isoform X4

      Conserved Domains (2) summary
      cd08038
      Location:418 → 490
      LARP_2; La RNA-binding domain of La-related protein 2
      COG5193
      Location:312 → 482
      LHP1; La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]

    9. XM_015139205.2 → XP_014994691.1  la-related protein 1B isoform X6

      Conserved Domains (1) summary
      cd08038
      Location:418 → 490
      LARP_2; La RNA-binding domain of La-related protein 2

    10. XM_015139204.2 → XP_014994690.1  la-related protein 1B isoform X5

      Conserved Domains (1) summary
      cd08038
      Location:418 → 490
      LARP_2; La RNA-binding domain of La-related protein 2

    11. XM_015139206.2 → XP_014994692.1  la-related protein 1B isoform X7

      Conserved Domains (1) summary
      cd08038
      Location:418 → 490
      LARP_2; La RNA-binding domain of La-related protein 2

    12. XM_015139207.2 → XP_014994693.1  la-related protein 1B isoform X8

      Conserved Domains (1) summary
      cd08038
      Location:418 → 490
      LARP_2; La RNA-binding domain of La-related protein 2

    13. XM_015139201.2 → XP_014994687.1  la-related protein 1B isoform X3

      UniProtKB/TrEMBL
      F7DKZ1, G7MRZ1
      Conserved Domains (2) summary
      smart00684
      Location:744 → 782
      DM15; Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function
      cl02755
      Location:216 → 288
      LAM; LA motif RNA-binding domain

    RNA

    1. XR_003729779.1 RNA Sequence

    2. XR_001444971.2 RNA Sequence

    3. XR_001444972.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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