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    ZBTB40 zinc finger and BTB domain containing 40 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708181, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZBTB40provided by VGNC
    Official Full Name
    zinc finger and BTB domain containing 40provided by VGNC
    Primary source
    VGNC:VGNC:79771
    See related
    Ensembl:ENSMMUG00000018618
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ZBTB40 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (202249560..202329716, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (21223297..21303427)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-6127 Neighboring gene EPH receptor A8 Neighboring gene uncharacterized LOC114673954 Neighboring gene BRCA2 and CDKN1A-interacting protein pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger and BTB domain-containing protein 40

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      202249560..202329716 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001101372.4 → XP_001101372.1  zinc finger and BTB domain-containing protein 40

      UniProtKB/TrEMBL
      A0A1D5QLT6, H9YYI4
      Related
      ENSMMUP00000049011.2, ENSMMUT00000072240.2
      Conserved Domains (4) summary
      COG5048
      Location:854 → 1106
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:838 → 858
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:952 → 970
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18225
      Location:1 → 116
      BTB_POZ_ZBTB40; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 40 (ZBTB40)

    2. XM_015130391.2 → XP_014985877.1  zinc finger and BTB domain-containing protein 40

      UniProtKB/TrEMBL
      A0A1D5QLT6, H9YYI4
      Conserved Domains (4) summary
      COG5048
      Location:854 → 1106
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:838 → 858
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:952 → 970
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18225
      Location:1 → 116
      BTB_POZ_ZBTB40; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 40 (ZBTB40)

    3. XM_028838305.1 → XP_028694138.1  zinc finger and BTB domain-containing protein 40

      UniProtKB/TrEMBL
      A0A1D5QLT6, H9YYI4
      Conserved Domains (4) summary
      COG5048
      Location:854 → 1106
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:838 → 858
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:952 → 970
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18225
      Location:1 → 116
      BTB_POZ_ZBTB40; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 40 (ZBTB40)
    Nucleotide Protein
    Heading Accession and Version

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