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    KATNB1 katanin regulatory subunit B1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711862, updated on 17-Aug-2024

    Summary

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    Official Symbol
    KATNB1provided by VGNC
    Official Full Name
    katanin regulatory subunit B1provided by VGNC
    Primary source
    VGNC:VGNC:73962
    Locus tag
    EGK_12832
    See related
    Ensembl:ENSMMUG00000015695
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See KATNB1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (44976318..44997622)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (41947461..41968756)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor G3 Neighboring gene mitochondrial carrier homolog 2 pseudogene Neighboring gene dynein regulatory complex subunit 7 Neighboring gene kinesin family member C3 Neighboring gene uncharacterized LOC106995039 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule depolymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in microtubule severing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of katanin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    katanin p80 WD40 repeat-containing subunit B1
    Names
    katanin p80 WD40-containing subunit B1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      44976318..44997622
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015126272.2 → XP_014981758.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

      Conserved Domains (5) summary
      COG2319
      Location:6 → 295
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:7 → 257
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam07259
      Location:366 → 456
      ProSAAS; ProSAAS precursor
      pfam13925
      Location:500 → 651
      Katanin_con80; con80 domain of Katanin
      sd00039
      Location:67 → 103
      7WD40; WD40 repeat [structural motif]

    2. XM_015126274.2 → XP_014981760.1  katanin p80 WD40 repeat-containing subunit B1 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZC79, A0A8J8YND7, F6SN16, G7NPV4
      Related
      ENSMMUP00000020606.3, ENSMMUT00000022028.4
      Conserved Domains (4) summary
      PRK14951
      Location:386 → 494
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional
      cd00200
      Location:7 → 257
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:67 → 103
      7WD40; WD40 repeat [structural motif]
      pfam13925
      Location:497 → 648
      Katanin_con80; con80 domain of Katanin
    Nucleotide Protein
    Heading Accession and Version

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