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    RCL1 RNA terminal phosphate cyclase like 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 694568, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RCL1provided by VGNC
    Official Full Name
    RNA terminal phosphate cyclase like 1provided by VGNC
    Primary source
    VGNC:VGNC:112107
    See related
    Ensembl:ENSMMUG00000057331
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RCL1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (78980770..79044196, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (79639007..79702349, complement)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene Janus kinase 2 Neighboring gene casein kinase I pseudogene Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene microRNA mir-101-2 Neighboring gene adenylate kinase 3 Neighboring gene cell division cycle 37 like 1, HSP90 cochaperone

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA 3'-terminal phosphate cyclase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257757.1 → NP_001244686.1  RNA 3'-terminal phosphate cyclase-like protein

      See identical proteins and their annotated locations for NP_001244686.1

      Status: PROVISIONAL

      Source sequence(s)
      JU332434
      UniProtKB/TrEMBL
      F7HHJ5, G7NG76
      Related
      ENSMMUP00000079987.1, ENSMMUT00000106969.1
      Conserved Domains (1) summary
      TIGR03400
      Location:8 → 371
      18S_RNA_Rcl1p; 18S rRNA biogenesis protein RCL1

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      78980770..79044196 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015117765.2 → XP_014973251.1  RNA 3'-terminal phosphate cyclase-like protein isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q4K8, G7NG76
      Related
      ENSMMUP00000042972.2, ENSMMUT00000070295.2
      Conserved Domains (1) summary
      TIGR03400
      Location:8 → 326
      18S_RNA_Rcl1p; 18S rRNA biogenesis protein RCL1

    2. XM_028834218.1 → XP_028690051.1  RNA 3'-terminal phosphate cyclase-like protein isoform X2

      Conserved Domains (1) summary
      TIGR03400
      Location:7 → 185
      18S_RNA_Rcl1p; 18S rRNA biogenesis protein RCL1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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