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    SOX30 SRY-box transcription factor 30 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 715811, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SOX30provided by VGNC
    Official Full Name
    SRY-box transcription factor 30provided by VGNC
    Primary source
    VGNC:VGNC:78026
    See related
    Ensembl:ENSMMUG00000021550
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SOX30 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (155029113..155055282, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (155778736..155806373, complement)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase domain 19 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC106999013 Neighboring gene chromosome 6 C5orf52 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor SOX-30
    Names
    SRY-box 30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      155029113..155055282 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015141321.2 → XP_014996807.2  transcription factor SOX-30 isoform X1

      UniProtKB/TrEMBL
      F7FAC7, G7MVR9
      Related
      ENSMMUP00000028380.4, ENSMMUT00000030327.4
      Conserved Domains (2) summary
      cd01388
      Location:336 → 406
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam05109
      Location:405 → 609
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    2. XM_028849863.1 → XP_028705696.1  transcription factor SOX-30 isoform X4

      UniProtKB/TrEMBL
      G7MVR9
      Conserved Domains (1) summary
      PHA03247
      Location:64 → 469
      PHA03247; large tegument protein UL36; Provisional

    3. XM_015141322.2 → XP_014996808.2  transcription factor SOX-30 isoform X3

      UniProtKB/TrEMBL
      G7MVR9
      Conserved Domains (2) summary
      PHA03247
      Location:64 → 555
      PHA03247; large tegument protein UL36; Provisional
      pfam03154
      Location:347 → 555
      Atrophin-1; Atrophin-1 family

    4. XM_028849862.1 → XP_028705695.1  transcription factor SOX-30 isoform X2

      UniProtKB/TrEMBL
      G7MVR9
      Conserved Domains (2) summary
      pfam03154
      Location:402 → 575
      Atrophin-1; Atrophin-1 family
      cl00082
      Location:336 → 403
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

    5. XM_015141323.2 → XP_014996809.2  transcription factor SOX-30 isoform X5

      Conserved Domains (1) summary
      cd01388
      Location:336 → 406
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    Nucleotide Protein
    Heading Accession and Version

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