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    TCEA2 transcription elongation factor A2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 694026, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TCEA2provided by VGNC
    Official Full Name
    transcription elongation factor A2provided by VGNC
    Primary source
    VGNC:VGNC:78280
    See related
    Ensembl:ENSMMUG00000018878
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TCEA2 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (99278813..99300794)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (213633..225767, complement)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene chromosome 10 C20orf204 homolog Neighboring gene SRY-box transcription factor 18 Neighboring gene regulator of G protein signaling 19 Neighboring gene opioid related nociceptin receptor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription elongation factor A protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257499.1 → NP_001244428.1  transcription elongation factor A protein 2

      See identical proteins and their annotated locations for NP_001244428.1

      Status: PROVISIONAL

      Source sequence(s)
      JU336116
      UniProtKB/TrEMBL
      G7N405, H9FZ10
      Related
      ENSMMUP00000024838.4, ENSMMUT00000026538.4
      Conserved Domains (4) summary
      smart00510
      Location:136 → 237
      TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
      cd00183
      Location:5 → 81
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
      cd13749
      Location:252 → 298
      Zn-ribbon_TFIIS; domain III/zinc ribbon domain of Transcription Factor IIS
      TIGR01385
      Location:6 → 299
      TFSII; transcription elongation factor S-II

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      99278813..99300794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028827144.1 → XP_028682977.1  transcription elongation factor A protein 2 isoform X1

      Conserved Domains (2) summary
      COG5164
      Location:182 → 331
      SPT5; Transcription elongation factor [Transcription]
      TIGR01385
      Location:6 → 172
      TFSII; transcription elongation factor S-II

    2. XM_028827143.1 → XP_028682976.1  transcription elongation factor A protein 2 isoform X1

      Conserved Domains (2) summary
      COG5164
      Location:182 → 331
      SPT5; Transcription elongation factor [Transcription]
      TIGR01385
      Location:6 → 172
      TFSII; transcription elongation factor S-II

    3. XM_028827142.1 → XP_028682975.1  transcription elongation factor A protein 2 isoform X1

      Conserved Domains (2) summary
      COG5164
      Location:182 → 331
      SPT5; Transcription elongation factor [Transcription]
      TIGR01385
      Location:6 → 172
      TFSII; transcription elongation factor S-II

    4. XM_015148526.2 → XP_015004012.2  transcription elongation factor A protein 2 isoform X2

      UniProtKB/TrEMBL
      F6WYS8, G7N405
      Related
      ENSMMUP00000024837.4, ENSMMUT00000026537.4
      Conserved Domains (1) summary
      TIGR01385
      Location:6 → 297
      TFSII; transcription elongation factor S-II

    5. XM_015148528.2 → XP_015004014.2  transcription elongation factor A protein 2 isoform X3

      UniProtKB/TrEMBL
      F6WYS1, G7N405
      Conserved Domains (1) summary
      TIGR01385
      Location:6 → 299
      TFSII; transcription elongation factor S-II
    Nucleotide Protein
    Heading Accession and Version

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