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    ZCCHC17 zinc finger CCHC-type containing 17 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 705172, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZCCHC17provided by VGNC
    Official Full Name
    zinc finger CCHC-type containing 17provided by VGNC
    Primary source
    VGNC:VGNC:79840
    Locus tag
    EGK_00484
    See related
    Ensembl:ENSMMUG00000012156
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ZCCHC17 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (193291693..193359997, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (30370663..30439747)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene serine incorporator 2 Neighboring gene fatty acid binding protein 3 Neighboring gene small nuclear ribonucleoprotein U5 subunit 40 Neighboring gene transcription initiation factor IIA subunit 2-like Neighboring gene sodium/potassium transporting ATPase interacting 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA stabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCHC domain-containing protein 17; nucleolar protein of 40 kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261640.1 → NP_001248569.1  zinc finger CCHC domain-containing protein 17

      See identical proteins and their annotated locations for NP_001248569.1

      Status: PROVISIONAL

      Source sequence(s)
      JV047322
      UniProtKB/TrEMBL
      A0A1D5QYY9, A0A1D5RKB0, A0A5F8ACQ6, F7GXR2
      Related
      ENSMMUP00000060754.2, ENSMMUT00000061763.2
      Conserved Domains (1) summary
      cd05686
      Location:13 → 86
      S1_pNO40; pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was ...

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      193291693..193359997 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028842067.1 → XP_028697900.1  nucleolar protein of 40 kDa isoform X2

      UniProtKB/TrEMBL
      A0A1D5R6E0, A0A5F8ACQ6
      Related
      ENSMMUP00000055878.2, ENSMMUT00000066274.2
      Conserved Domains (1) summary
      cl09927
      Location:1 → 38
      S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

    2. XM_028842043.1 → XP_028697876.1  nucleolar protein of 40 kDa isoform X1

      UniProtKB/TrEMBL
      A0A1D5QYY9, A0A1D5RKB0, A0A5F8ACQ6, F7GXR2
      Conserved Domains (1) summary
      cd05686
      Location:13 → 86
      S1_pNO40; pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was ...

    3. XM_015133162.2 → XP_014988648.1  nucleolar protein of 40 kDa isoform X3

      Conserved Domains (2) summary
      PRK06676
      Location:9 → 140
      rpsA; 30S ribosomal protein S1; Reviewed
      cd05686
      Location:45 → 108
      S1_pNO40; pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was ...

    4. XM_028842048.1 → XP_028697881.1  nucleolar protein of 40 kDa isoform X2

      UniProtKB/TrEMBL
      A0A1D5R6E0, A0A5F8ACQ6
      Related
      ENSMMUP00000062086.1, ENSMMUT00000101771.1
      Conserved Domains (1) summary
      cl09927
      Location:1 → 38
      S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

    5. XM_015133152.2 → XP_014988638.1  nucleolar protein of 40 kDa isoform X1

      UniProtKB/TrEMBL
      A0A1D5QYY9, A0A1D5RKB0, A0A5F8ACQ6, F7GXR2
      Related
      ENSMMUP00000015950.4, ENSMMUT00000017030.4
      Conserved Domains (1) summary
      cd05686
      Location:13 → 86
      S1_pNO40; pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was ...
    Nucleotide Protein
    Heading Accession and Version

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