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    PUF60 poly(U) binding splicing factor 60 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 699008, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PUF60provided by VGNC
    Official Full Name
    poly(U) binding splicing factor 60provided by VGNC
    Primary source
    VGNC:VGNC:84106
    See related
    Ensembl:ENSMMUG00000013558
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PUF60 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (144079572..144095659, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (143081817..143095380, complement)

    Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106999989 Neighboring gene microRNA mir-937 Neighboring gene nuclear receptor binding protein 2 Neighboring gene epiplakin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    poly(U)-binding-splicing factor PUF60
    Names
    poly-U binding splicing factor 60KDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041761.1 Reference Mmul_10 Primary Assembly

      Range
      144079572..144095659 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015146163.2 → XP_015001649.1  poly(U)-binding-splicing factor PUF60 isoform X3

      UniProtKB/TrEMBL
      G7N098, H9Z6F0
      Conserved Domains (4) summary
      TIGR01645
      Location:7 → 543
      half-pint; poly-U binding splicing factor, half-pint family
      cd12370
      Location:113 → 188
      RRM1_PUF60; RNA recognition motif 1 in (U)-binding-splicing factor PUF60 and similar proteins
      cd12371
      Location:210 → 286
      RRM2_PUF60; RNA recognition motif 2 in (U)-binding-splicing factor PUF60 and similar proteins
      cd12648
      Location:445 → 542
      RRM3_UHM_PUF60; RNA recognition motif 3 in UHM domain of poly(U)-binding-splicing factor PUF60 and similar proteins

    2. XM_015146158.2 → XP_015001644.1  poly(U)-binding-splicing factor PUF60 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QFJ8, H9FRE7
      Related
      ENSMMUP00000071378.1, ENSMMUT00000093710.1
      Conserved Domains (5) summary
      TIGR01645
      Location:7 → 560
      half-pint; poly-U binding splicing factor, half-pint family
      cd12370
      Location:130 → 205
      RRM1_PUF60; RNA recognition motif 1 in (U)-binding-splicing factor PUF60 and similar proteins
      cd12371
      Location:227 → 303
      RRM2_PUF60; RNA recognition motif 2 in (U)-binding-splicing factor PUF60 and similar proteins
      cd12648
      Location:462 → 559
      RRM3_UHM_PUF60; RNA recognition motif 3 in UHM domain of poly(U)-binding-splicing factor PUF60 and similar proteins
      cl21455
      Location:63 → 154
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    3. XM_001087851.4 → XP_001087851.2  poly(U)-binding-splicing factor PUF60 isoform X4

      UniProtKB/TrEMBL
      G7N098
      Conserved Domains (4) summary
      TIGR01645
      Location:9 → 542
      half-pint; poly-U binding splicing factor, half-pint family
      cd12370
      Location:112 → 187
      RRM1_PUF60; RNA recognition motif 1 in (U)-binding-splicing factor PUF60 and similar proteins
      cd12371
      Location:209 → 285
      RRM2_PUF60; RNA recognition motif 2 in (U)-binding-splicing factor PUF60 and similar proteins
      cd12648
      Location:444 → 541
      RRM3_UHM_PUF60; RNA recognition motif 3 in UHM domain of poly(U)-binding-splicing factor PUF60 and similar proteins

    4. XM_001087975.4 → XP_001087975.2  poly(U)-binding-splicing factor PUF60 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QFJ8
      Related
      ENSMMUP00000031872.3, ENSMMUT00000038793.3
      Conserved Domains (5) summary
      TIGR01645
      Location:9 → 559
      half-pint; poly-U binding splicing factor, half-pint family
      cd12370
      Location:129 → 204
      RRM1_PUF60; RNA recognition motif 1 in (U)-binding-splicing factor PUF60 and similar proteins
      cd12371
      Location:226 → 302
      RRM2_PUF60; RNA recognition motif 2 in (U)-binding-splicing factor PUF60 and similar proteins
      cd12648
      Location:461 → 558
      RRM3_UHM_PUF60; RNA recognition motif 3 in UHM domain of poly(U)-binding-splicing factor PUF60 and similar proteins
      cl21455
      Location:62 → 153
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    5. XM_028853089.1 → XP_028708922.1  poly(U)-binding-splicing factor PUF60 isoform X6

      UniProtKB/TrEMBL
      A0A5F8AQ00, G7N098
      Related
      ENSMMUP00000069454.1, ENSMMUT00000091829.1
      Conserved Domains (1) summary
      TIGR01645
      Location:1 → 499
      half-pint; poly-U binding splicing factor, half-pint family

    6. XM_015146160.2 → XP_015001646.1  poly(U)-binding-splicing factor PUF60 isoform X5

      UniProtKB/TrEMBL
      A0A1D5Q637, A0A1D5QFJ8, A0A1D5QV23, F7FN20, F7FN25
      Related
      ENSMMUP00000051903.2, ENSMMUT00000077082.2
      Conserved Domains (1) summary
      TIGR01645
      Location:1 → 516
      half-pint; poly-U binding splicing factor, half-pint family
    Nucleotide Protein
    Heading Accession and Version

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