U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ELFN1 extracellular leucine rich repeat and fibronectin type III domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 697716, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ELFN1provided by VGNC
    Official Full Name
    extracellular leucine rich repeat and fibronectin type III domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:72204
    See related
    Ensembl:ENSMMUG00000003283
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ELFN1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (34745746..34828545)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (35615860..35699669)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114676721 Neighboring gene transcription factor A, mitochondrial-like Neighboring gene uncharacterized LOC100428089 Neighboring gene uncharacterized LOC106997330 Neighboring gene mitotic arrest deficient 1 like 1 Neighboring gene uncharacterized LOC114676859 Neighboring gene uncharacterized LOC106997332

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein ELFN1
    Names
    extracellular leucine-rich repeat and fibronectin type-III domain-containing protein 1
    protein phosphatase 1, regulatory subunit 28

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001265758.1 → NP_001252687.1  protein ELFN1 precursor

      See identical proteins and their annotated locations for NP_001252687.1

      Status: PROVISIONAL

      Source sequence(s)
      JV600280
      UniProtKB/TrEMBL
      F7FK41, I2CUN3
      Related
      ENSMMUP00000004373.3, ENSMMUT00000004639.4
      Conserved Domains (3) summary
      TIGR00864
      Location:162 → 256
      PCC; polycystin cation channel protein
      sd00031
      Location:65 → 85
      LRR_1; leucine-rich repeat [structural motif]
      pfam13855
      Location:85 → 144
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      34745746..34828545
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015133161.2 → XP_014988647.1  protein ELFN1 isoform X1

      UniProtKB/TrEMBL
      F7FK41, I2CUN3
      Conserved Domains (3) summary
      TIGR00864
      Location:162 → 256
      PCC; polycystin cation channel protein
      sd00031
      Location:65 → 85
      LRR_1; leucine-rich repeat [structural motif]
      pfam13855
      Location:85 → 144
      LRR_8; Leucine rich repeat

    2. XM_015133163.2 → XP_014988649.1  protein ELFN1 isoform X1

      UniProtKB/TrEMBL
      F7FK41, I2CUN3
      Conserved Domains (3) summary
      TIGR00864
      Location:162 → 256
      PCC; polycystin cation channel protein
      sd00031
      Location:65 → 85
      LRR_1; leucine-rich repeat [structural motif]
      pfam13855
      Location:85 → 144
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials