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    CDH23 cadherin related 23 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709433, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CDH23provided by VGNC
    Official Full Name
    cadherin related 23provided by VGNC
    Primary source
    VGNC:VGNC:70942
    See related
    Ensembl:ENSMMUG00000014733
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CDH23 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    71
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (65959072..66379116, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (60552586..60974387, complement)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100423563 Neighboring gene uncharacterized LOC107000167 Neighboring gene carbohydrate sulfotransferase 3 Neighboring gene U7 small nuclear RNA Neighboring gene prosaposin Neighboring gene chromosome 9 C10orf105 homolog Neighboring gene V-set immunoregulatory receptor Neighboring gene uncharacterized LOC107000169 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC114669974 Neighboring gene solute carrier family 29 member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cadherin-23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      65959072..66379116 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028826508.1 → XP_028682341.1  cadherin-23 isoform X2

      UniProtKB/TrEMBL
      G7N279
      Conserved Domains (1) summary
      cd11304
      Location:1424 → 1521
      Cadherin_repeat; Cadherin tandem repeat domain

    2. XM_015147422.2 → XP_015002908.2  cadherin-23 isoform X3

      UniProtKB/TrEMBL
      G7N279
      Conserved Domains (1) summary
      cd11304
      Location:1426 → 1523
      Cadherin_repeat; Cadherin tandem repeat domain

    3. XM_015147425.2 → XP_015002911.2  cadherin-23 isoform X1

      UniProtKB/TrEMBL
      F7GVN5, G7N279
      Related
      ENSMMUP00000017018.4, ENSMMUT00000018179.4
      Conserved Domains (1) summary
      cd11304
      Location:1426 → 1523
      Cadherin_repeat; Cadherin tandem repeat domain

    4. XM_028826512.1 → XP_028682345.1  cadherin-23 isoform X7

      Conserved Domains (2) summary
      cd11304
      Location:502 → 596
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:3 → 59
      CA; Cadherin repeats

    5. XM_028826515.1 → XP_028682348.1  cadherin-23 isoform X9

      Conserved Domains (1) summary
      cd11304
      Location:166 → 264
      Cadherin_repeat; Cadherin tandem repeat domain

    6. XM_028826513.1 → XP_028682346.1  cadherin-23 isoform X8

      Conserved Domains (1) summary
      cd11304
      Location:166 → 264
      Cadherin_repeat; Cadherin tandem repeat domain

    7. XM_028826514.1 → XP_028682347.1  cadherin-23 isoform X9

      Conserved Domains (1) summary
      cd11304
      Location:166 → 264
      Cadherin_repeat; Cadherin tandem repeat domain

    8. XM_028826510.1 → XP_028682343.1  cadherin-23 isoform X4

      UniProtKB/TrEMBL
      G7N279
      Conserved Domains (1) summary
      cd11304
      Location:1426 → 1523
      Cadherin_repeat; Cadherin tandem repeat domain

    9. XM_015147424.2 → XP_015002910.2  cadherin-23 isoform X6

      Conserved Domains (1) summary
      cd11304
      Location:1426 → 1523
      Cadherin_repeat; Cadherin tandem repeat domain

    10. XM_028826511.1 → XP_028682344.1  cadherin-23 isoform X5

      Conserved Domains (1) summary
      cd11304
      Location:1426 → 1523
      Cadherin_repeat; Cadherin tandem repeat domain

    RNA

    1. XR_001447151.2 RNA Sequence

    2. XR_003719359.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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