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    ZBTB18 zinc finger and BTB domain containing 18 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714294, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZBTB18provided by VGNC
    Official Full Name
    zinc finger and BTB domain containing 18provided by VGNC
    Primary source
    VGNC:VGNC:78881
    Locus tag
    EGK_02070
    See related
    Ensembl:ENSMMUG00000015664
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    ZNF238
    Orthologs
    human mouse all
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    Genomic context

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    See ZBTB18 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (5061715..5070515, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (220536510..220544399)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100429009 Neighboring gene uncharacterized LOC106995234 Neighboring gene uncharacterized LOC114678656 Neighboring gene uncharacterized LOC114678657

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger and BTB domain-containing protein 18
    Names
    zinc finger protein 238

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257892.1 → NP_001244821.1  zinc finger and BTB domain-containing protein 18

      See identical proteins and their annotated locations for NP_001244821.1

      Status: PROVISIONAL

      Source sequence(s)
      JU320017
      UniProtKB/TrEMBL
      F6RDC9, H9EN14
      Related
      ENSMMUP00000020548.3, ENSMMUT00000021969.3
      Conserved Domains (4) summary
      COG5048
      Location:303 → 490
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:421 → 441
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18324
      Location:10 → 156
      BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
      pfam13465
      Location:434 → 456
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      5061715..5070515 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028844988.1 → XP_028700821.1  zinc finger and BTB domain-containing protein 18 isoform X1

      UniProtKB/TrEMBL
      G7MFK9
      Conserved Domains (4) summary
      COG5048
      Location:294 → 481
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:412 → 432
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18324
      Location:1 → 147
      BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
      pfam13465
      Location:425 → 447
      zf-H2C2_2; Zinc-finger double domain

    2. XM_028845000.1 → XP_028700833.1  zinc finger and BTB domain-containing protein 18 isoform X1

      UniProtKB/TrEMBL
      G7MFK9
      Conserved Domains (4) summary
      COG5048
      Location:294 → 481
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:412 → 432
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18324
      Location:1 → 147
      BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
      pfam13465
      Location:425 → 447
      zf-H2C2_2; Zinc-finger double domain

    3. XM_028844995.1 → XP_028700828.1  zinc finger and BTB domain-containing protein 18 isoform X1

      UniProtKB/TrEMBL
      G7MFK9
      Conserved Domains (4) summary
      COG5048
      Location:294 → 481
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:412 → 432
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18324
      Location:1 → 147
      BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
      pfam13465
      Location:425 → 447
      zf-H2C2_2; Zinc-finger double domain

    4. XM_028844991.1 → XP_028700824.1  zinc finger and BTB domain-containing protein 18 isoform X1

      UniProtKB/TrEMBL
      G7MFK9
      Conserved Domains (4) summary
      COG5048
      Location:294 → 481
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:412 → 432
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18324
      Location:1 → 147
      BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
      pfam13465
      Location:425 → 447
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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