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    CNTN6 contactin 6 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 705207, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CNTN6provided by VGNC
    Official Full Name
    contactin 6provided by VGNC
    Primary source
    VGNC:VGNC:84197
    Locus tag
    EGK_11477
    See related
    Ensembl:ENSMMUG00000008549
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CNTN6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (132424241..132733251)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (65189163..65563827, complement)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene cell adhesion molecule L1 like Neighboring gene 40S ribosomal protein SA-like Neighboring gene uncharacterized LOC114676383 Neighboring gene 60S ribosomal protein L23a pseudogene Neighboring gene actin, cytoplasmic 2-like Neighboring gene contactin 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    contactin-6
    Names
    Neural recognition molecule NB-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      132424241..132733251
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028844371.1 → XP_028700204.1  contactin-6 isoform X1

      UniProtKB/TrEMBL
      A0A5F8AQ30, A0A663DDD3, A0A8J8XRK7, F6UQU5, G7MKV4
      Conserved Domains (2) summary
      cd00063
      Location:598 → 691
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cl11960
      Location:319 → 403
      Ig; Immunoglobulin domain

    2. XM_028844373.1 → XP_028700206.1  contactin-6 isoform X2

      UniProtKB/TrEMBL
      A0A5F8AQ30
      Conserved Domains (2) summary
      cd00063
      Location:581 → 674
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cl11960
      Location:302 → 386
      Ig; Immunoglobulin domain

    3. XM_028844374.1 → XP_028700207.1  contactin-6 isoform X3

      UniProtKB/TrEMBL
      A0A5F8AQ30
      Conserved Domains (2) summary
      cd00063
      Location:526 → 619
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cl11960
      Location:247 → 331
      Ig; Immunoglobulin domain

    4. XM_028844375.1 → XP_028700208.1  contactin-6 isoform X3

      UniProtKB/TrEMBL
      A0A5F8AQ30
      Conserved Domains (2) summary
      cd00063
      Location:526 → 619
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cl11960
      Location:247 → 331
      Ig; Immunoglobulin domain

    5. XM_028844372.1 → XP_028700205.1  contactin-6 isoform X1

      UniProtKB/TrEMBL
      A0A5F8AQ30, A0A663DDD3, A0A8J8XRK7, F6UQU5, G7MKV4
      Related
      ENSMMUP00000011214.4, ENSMMUT00000011955.4
      Conserved Domains (2) summary
      cd00063
      Location:598 → 691
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cl11960
      Location:319 → 403
      Ig; Immunoglobulin domain

    6. XM_028844376.1 → XP_028700209.1  contactin-6 isoform X4

      Conserved Domains (3) summary
      smart00060
      Location:529 → 609
      FN3; Fibronectin type 3 domain
      cd00063
      Location:224 → 317
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cl11960
      Location:141 → 224
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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