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    NPHP3 nephrocystin 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 717622, updated on 5-Mar-2024

    Summary

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    Gene symbol
    NPHP3
    Gene description
    nephrocystin 3
    See related
    Ensembl:ENSMMUG00000021772
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See NPHP3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (34946185..34988525, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (169220557..169262244)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA dehydrogenase family member 11 Neighboring gene atypical chemokine receptor 4 Neighboring gene ubiquitin like modifier activating enzyme 5 Neighboring gene uncharacterized LOC106997117 Neighboring gene uncharacterized LOC106997116

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in convergent extension IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in determination of left/right symmetry IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in kidney development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nephrocystin-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      34946185..34988525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028843707.1 → XP_028699540.1  nephrocystin-3 isoform X1

      UniProtKB/TrEMBL
      F7DEY2
      Related
      ENSMMUP00000068236.1, ENSMMUT00000087502.1
      Conserved Domains (3) summary
      sd00006
      Location:1135 → 1163
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:1133 → 1209
      TPR_12; Tetratricopeptide repeat
      pfam03938
      Location:124 → 206
      OmpH; Outer membrane protein (OmpH-like)

    2. XM_015132131.2 → XP_014987617.2  nephrocystin-3 isoform X2

      UniProtKB/TrEMBL
      F7DEY2
      Conserved Domains (3) summary
      sd00006
      Location:1135 → 1163
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:1133 → 1209
      TPR_12; Tetratricopeptide repeat
      pfam03938
      Location:124 → 206
      OmpH; Outer membrane protein (OmpH-like)

    RNA

    1. XR_003727100.1 RNA Sequence

    2. XR_003727101.1 RNA Sequence

    3. XR_003727099.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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