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    CLN8 CLN8 transmembrane ER and ERGIC protein [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 716441, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CLN8provided by VGNC
    Official Full Name
    CLN8 transmembrane ER and ERGIC proteinprovided by VGNC
    Primary source
    VGNC:VGNC:99469
    Locus tag
    EGK_18645
    See related
    Ensembl:ENSMMUG00000009470
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CLN8 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (2265092..2289837)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (1506561..1530955)

    Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene DLG associated protein 2 Neighboring gene uncharacterized LOC114680158 Neighboring gene uncharacterized LOC106999645 Neighboring gene uncharacterized LOC114680159 Neighboring gene uncharacterized LOC106999647 Neighboring gene uncharacterized LOC114680160

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in lipid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CLN8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194050.2 → NP_001180979.1  protein CLN8

      See identical proteins and their annotated locations for NP_001180979.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000449
      UniProtKB/TrEMBL
      A0A8J8YKH2, F7A8P7, G7N0E6
      Related
      ENSMMUP00000046564.1, ENSMMUT00000060749.2
      Conserved Domains (1) summary
      smart00724
      Location:64 → 262
      TLC; TRAM, LAG1 and CLN8 homology domains

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041761.1 Reference Mmul_10 Primary Assembly

      Range
      2265092..2289837
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015144679.2 → XP_015000165.1  protein CLN8 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YKH2, F7A8P7, G7N0E6
      Conserved Domains (1) summary
      smart00724
      Location:64 → 262
      TLC; TRAM, LAG1 and CLN8 homology domains

    2. XM_015144681.2 → XP_015000167.1  protein CLN8 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YKH2, F7A8P7, G7N0E6
      Related
      ENSMMUP00000074007.1, ENSMMUT00000088290.1
      Conserved Domains (1) summary
      smart00724
      Location:64 → 262
      TLC; TRAM, LAG1 and CLN8 homology domains

    3. XM_015144678.2 → XP_015000164.1  protein CLN8 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YKH2, F7A8P7, G7N0E6
      Related
      ENSMMUP00000012384.2, ENSMMUT00000013213.4
      Conserved Domains (1) summary
      smart00724
      Location:64 → 262
      TLC; TRAM, LAG1 and CLN8 homology domains
    Nucleotide Protein
    Heading Accession and Version

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