U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PTCH1 patched 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718751, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PTCH1provided by VGNC
    Official Full Name
    patched 1provided by VGNC
    Primary source
    VGNC:VGNC:76463
    See related
    Ensembl:ENSMMUG00000002634
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PTCH1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (112307095..112382443)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (109279474..109355731, complement)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106993849 Neighboring gene uncharacterized LOC114672866 Neighboring gene uncharacterized LOC114672867 Neighboring gene metallothionein-1E pseudogene Neighboring gene uncharacterized LOC106993843

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hedgehog family protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hedgehog receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables smoothened binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in smoothened signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein patched homolog 1
    Names
    patched homolog 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      112307095..112382443
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028835407.1 → XP_028691240.1  protein patched homolog 1 isoform X3

      UniProtKB/TrEMBL
      F7H770, F7H772
      Related
      ENSMMUP00000003549.4, ENSMMUT00000003756.4
      Conserved Domains (2) summary
      PHA03307
      Location:1163 → 1297
      PHA03307; transcriptional regulator ICP4; Provisional
      TIGR00918
      Location:2 → 1140
      2A060602; The Eukaryotic (Putative) Sterol Transporter (EST) Family

    2. XM_015118103.2 → XP_014973589.2  protein patched homolog 1 isoform X5

      UniProtKB/TrEMBL
      F7H772
      Conserved Domains (2) summary
      PHA03307
      Location:1227 → 1361
      PHA03307; transcriptional regulator ICP4; Provisional
      TIGR00918
      Location:64 → 1204
      2A060602; The Eukaryotic (Putative) Sterol Transporter (EST) Family

    3. XM_015118101.2 → XP_014973587.2  protein patched homolog 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QSK7, A0A5F7ZF16
      Related
      ENSMMUP00000051035.2, ENSMMUT00000074709.2
      Conserved Domains (2) summary
      PHA03307
      Location:1231 → 1365
      PHA03307; transcriptional regulator ICP4; Provisional
      TIGR00918
      Location:46 → 1208
      2A060602; The Eukaryotic (Putative) Sterol Transporter (EST) Family

    4. XM_028835406.1 → XP_028691239.1  protein patched homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZF16
      Conserved Domains (2) summary
      PHA03377
      Location:1237 → 1355
      PHA03377; EBNA-3C; Provisional
      TIGR00918
      Location:46 → 1208
      2A060602; The Eukaryotic (Putative) Sterol Transporter (EST) Family

    5. XM_015118102.2 → XP_014973588.2  protein patched homolog 1 isoform X4

      UniProtKB/TrEMBL
      F6WGC6, G7NF39
      Related
      ENSMMUP00000038737.3, ENSMMUT00000045695.3
      Conserved Domains (2) summary
      PHA03307
      Location:1078 → 1212
      PHA03307; transcriptional regulator ICP4; Provisional
      TIGR00918
      Location:1 → 1055
      2A060602; The Eukaryotic (Putative) Sterol Transporter (EST) Family

    RNA

    1. XR_001440207.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.