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    SSBP3 single stranded DNA binding protein 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 715114, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SSBP3provided by VGNC
    Official Full Name
    single stranded DNA binding protein 3provided by VGNC
    Primary source
    VGNC:VGNC:77926
    See related
    Ensembl:ENSMMUG00000020976
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SSBP3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (170006842..170187966)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (53905211..54089126, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672288 Neighboring gene acyl-CoA thioesterase 11 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene uncharacterized LOC114672298 Neighboring gene mitochondrial ribosomal protein L37 Neighboring gene cytochrome b5 reductase like Neighboring gene CUB domain containing protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    single-stranded DNA-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261084.1 → NP_001248013.1  single-stranded DNA-binding protein 3

      See identical proteins and their annotated locations for NP_001248013.1

      Status: PROVISIONAL

      Source sequence(s)
      JV046625
      UniProtKB/TrEMBL
      F7HMU8, H9FAK2, H9Z778
      Related
      ENSMMUP00000027603.4, ENSMMUT00000029500.4
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 365
      SSDP; Single-stranded DNA binding protein, SSDP

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      170006842..170187966
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015139547.2 → XP_014995033.1  single-stranded DNA-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      H9FAK2
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 373
      SSDP; Single-stranded DNA binding protein, SSDP

    2. XM_015139553.2 → XP_014995039.1  single-stranded DNA-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZAU9, H9FAK2
      Related
      ENSMMUP00000062723.1, ENSMMUT00000091849.1
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 346
      SSDP; Single-stranded DNA binding protein, SSDP

    3. XM_028845282.1 → XP_028701115.1  single-stranded DNA-binding protein 3 isoform X4

      UniProtKB/TrEMBL
      H9FAK2
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 326
      SSDP; Single-stranded DNA binding protein, SSDP

    4. XM_028845288.1 → XP_028701121.1  single-stranded DNA-binding protein 3 isoform X5

      UniProtKB/TrEMBL
      H9FAK2
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 318
      SSDP; Single-stranded DNA binding protein, SSDP

    5. XM_015139555.2 → XP_014995041.1  single-stranded DNA-binding protein 3 isoform X3

      UniProtKB/TrEMBL
      F7HMU7, H9FAK2, I0FQG9
      Related
      ENSMMUP00000027604.3, ENSMMUT00000029501.4
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 338
      SSDP; Single-stranded DNA binding protein, SSDP
    Nucleotide Protein
    Heading Accession and Version

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