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    CAPN5 calpain 5 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 698077, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CAPN5provided by VGNC
    Official Full Name
    calpain 5provided by VGNC
    Primary source
    VGNC:VGNC:70534
    See related
    Ensembl:ENSMMUG00000018174
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    calpain-5
    Orthologs
    human mouse all
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    Genomic context

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    See CAPN5 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (70135784..70192928)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (69254649..69311785)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA24 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 Neighboring gene myosin VIIA Neighboring gene glycerophosphodiester phosphodiesterase domain containing 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calpain-5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      70135784..70192928
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028833838.1 → XP_028689671.1  calpain-5 isoform X1

      UniProtKB/TrEMBL
      F7EDT3, H9EUZ1
      Related
      ENSMMUP00000023905.4, ENSMMUT00000025548.4
      Conserved Domains (3) summary
      smart00230
      Location:13 → 392
      CysPc; Calpain-like thiol protease family
      cd04046
      Location:556 → 679
      C2_Calpain; C2 domain present in Calpain proteins
      cd00214
      Location:393 → 539
      Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...

    2. XM_015115243.2 → XP_014970729.1  calpain-5 isoform X2

      UniProtKB/TrEMBL
      F7EDU0, H9EUZ1
      Related
      ENSMMUP00000023904.4, ENSMMUT00000025547.4
      Conserved Domains (3) summary
      cd04046
      Location:515 → 638
      C2_Calpain; C2 domain present in Calpain proteins
      pfam00648
      Location:27 → 341
      Peptidase_C2; Calpain family cysteine protease
      pfam01067
      Location:354 → 493
      Calpain_III; Calpain large subunit, domain III
    Nucleotide Protein
    Heading Accession and Version

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