CLSTN1 calsyntenin 1 [Macaca mulatta (Rhesus monkey)] - Gene

Summary

Official Symbol: CLSTN1provided by VGNC
Official Full Name: calsyntenin 1provided by VGNC
Primary source: VGNC:VGNC:82127
See related: Ensembl:ENSMMUG00000006225
Gene type: protein coding
RefSeq status: MODEL
Organism: Macaca mulatta
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
103	current	Mmul_10 (GCF_003339765.1)	1	NC_041754.1 (214658207..214759627)
102	previous assembly	Mmul_8.0.1 (GCF_000772875.2)	1	NC_027893.1 (8905643..8935428, complement)

Chromosome 1 - NC_041754.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D1S1458 (e-PCR)
- UniSTS:149654

IB3691 (e-PCR)
- UniSTS:47589

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables X11-like protein binding	IEA Inferred from Electronic Annotation more info	PubMed
enables amyloid-beta binding	IEA Inferred from Electronic Annotation more info	PubMed
enables calcium ion binding	IEA Inferred from Electronic Annotation more info	PubMed
enables kinesin binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of synapse assembly	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of synaptic transmission	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cell surface	IEA Inferred from Electronic Annotation more info	PubMed
located_in postsynaptic membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: calsyntenin-1

Names: calsyntenin-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

NC_041754.1 Reference Mmul_10 Primary Assembly

Range

214658207..214759627

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_028840112.1 → XP_028695945.1 calsyntenin-1 isoform X1

UniProtKB/TrEMBL

A0A5F7ZM61, I0FQ20

Related

ENSMMUP00000065707.1, ENSMMUT00000092726.1

Conserved Domains (3) summary

cd11304
Location:168 → 258

Cadherin_repeat; Cadherin tandem repeat domain

pfam14575
Location:863 → 920

EphA2_TM; Ephrin type-A receptor 2 transmembrane domain

cl22861
Location:365 → 477

LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
XM_028840124.1 → XP_028695957.1 calsyntenin-1 isoform X3

UniProtKB/TrEMBL

I0FQ20

Conserved Domains (3) summary

cd11304
Location:168 → 258

Cadherin_repeat; Cadherin tandem repeat domain

pfam14575
Location:844 → 901

EphA2_TM; Ephrin type-A receptor 2 transmembrane domain

cl22861
Location:365 → 525

LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
XM_028840117.1 → XP_028695950.1 calsyntenin-1 isoform X2

UniProtKB/TrEMBL

I0FQ19

Conserved Domains (3) summary

cd11304
Location:158 → 248

Cadherin_repeat; Cadherin tandem repeat domain

pfam14575
Location:853 → 910

EphA2_TM; Ephrin type-A receptor 2 transmembrane domain

cl22861
Location:355 → 467

LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...