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    AP5S1 adaptor related protein complex 5 subunit sigma 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718611, updated on 17-Aug-2024

    Summary

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    Official Symbol
    AP5S1provided by VGNC
    Official Full Name
    adaptor related protein complex 5 subunit sigma 1provided by VGNC
    Primary source
    VGNC:VGNC:69837
    See related
    Ensembl:ENSMMUG00000057292
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    C20orf29
    Orthologs
    human mouse all
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    Genomic context

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    See AP5S1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (62659022..62665224, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (36681612..36687906)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene pantothenate kinase 2 Neighboring gene microRNA mir-103-2 Neighboring gene mitochondrial antiviral signaling protein Neighboring gene cell division cycle 25B Neighboring gene centromere protein B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-type membrane coat adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-5 complex subunit sigma-1
    Names
    adaptor related protein complex 5 sigma 1 subunit
    protein C20orf29

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194748.1 → NP_001181677.1  AP-5 complex subunit sigma-1

      See identical proteins and their annotated locations for NP_001181677.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000030
      UniProtKB/TrEMBL
      A0A5F7ZGM5, A0A8J8XMD8, G7N2V4, H9FWR2
      Related
      ENSMMUP00000068337.1, ENSMMUT00000099686.1
      Conserved Domains (1) summary
      pfam15001
      Location:1 → 194
      AP-5_subunit_s1; AP-5 complex subunit sigma-1

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      62659022..62665224 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015149382.2 → XP_015004868.1  AP-5 complex subunit sigma-1 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZGM5, A0A8J8XMD8, G7N2V4, H9FWR2
      Related
      ENSMMUP00000063775.1, ENSMMUT00000092282.1
      Conserved Domains (1) summary
      pfam15001
      Location:1 → 194
      AP-5_subunit_s1; AP-5 complex subunit sigma-1

    2. XM_015149383.2 → XP_015004869.1  AP-5 complex subunit sigma-1 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZGM5, A0A8J8XMD8, G7N2V4, H9FWR2
      Conserved Domains (1) summary
      pfam15001
      Location:1 → 194
      AP-5_subunit_s1; AP-5 complex subunit sigma-1

    3. XM_015149381.2 → XP_015004867.1  AP-5 complex subunit sigma-1 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZGM5, A0A8J8XMD8, G7N2V4, H9FWR2
      Conserved Domains (1) summary
      pfam15001
      Location:1 → 194
      AP-5_subunit_s1; AP-5 complex subunit sigma-1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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