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    B0454.6 Cationic amino acid transporter C-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 173650, updated on 9-Dec-2024

    Summary

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    Official Symbol
    B0454.6
    Official Full Name
    Cationic amino acid transporter C-terminal domain-containing protein
    Primary source
    WormBase:WBGene00015197
    Locus tag
    CELE_B0454.6
    See related
    AllianceGenome:WB:WBGene00015197
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable amino acid transmembrane transporter activity. Predicted to be involved in amino acid transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human SLC7A4 (solute carrier family 7 member 4). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See B0454.6 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    9
    Sequence:
    Chromosome: II; NC_003280.10 (3032780..3036122)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene AT-rich interactive domain-containing protein 2;STI1 domain-containing protein Neighboring gene C-type LECtin Neighboring gene C-type LECtin Neighboring gene ncRNA Neighboring gene TransThyretin-Related family domain Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables amino acid transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in amino acid transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in amino acid transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Cationic amino acid transporter C-terminal domain-containing protein
    NP_494428.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      3032780..3036122
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062027.7 → NP_494428.1  Cationic amino acid transporter C-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_494428.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O17167
      Conserved Domains (1) summary
      TIGR00906
      Location:7 → 559
      2A0303; cationic amino acid transport permease
    Nucleotide Protein
    Heading Accession and Version

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