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    odr-2 Homolog of Odr-2 (Two);Protein quiver;Protein sleepless [ Caenorhabditis elegans ]

    Gene ID: 179098, updated on 9-Dec-2024

    Summary

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    Official Symbol
    odr-2
    Official Full Name
    Homolog of Odr-2 (Two);Protein quiver;Protein sleepless
    Primary source
    WormBase:WBGene00003849
    Locus tag
    CELE_T01C4.2
    See related
    AllianceGenome:WB:WBGene00003849
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in olfactory behavior and response to odorant. Located in axon; external side of plasma membrane; and neuronal cell body. Is expressed in several structures, including IL1 neuron; ganglia; head neurons; somatic nervous system; and tail. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See odr-2 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    8
    Sequence:
    Chromosome: V; NC_003283.11 (7103547..7114439)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Early Pheromone Experience Modifies a Synaptic Activity to Influence Adult Pheromone Responses of C. elegans. Hong M, et al. Curr Biol, 2017 Oct 23. PMID 28988862, Free PMC Article
    2. Active uptake of artificial particles in the nematode Caenorhabditis elegans. Kiyama Y, et al. J Exp Biol, 2012 Apr 1. PMID 22399663
    3. Five-colour in vivo imaging of neurons in Caenorhabditis elegans. Hutter H. J Microsc, 2004 Aug. PMID 15315508
    4. Visualization of integral and peripheral cell surface proteins in live Caenorhabditis elegans. Gottschalk A, et al. J Neurosci Methods, 2006 Jun 30. PMID 16466809
    5. The mind of a worm. Thomas JH. Science, 1994 Jun 17. PMID 7911601

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in chemosensory behavior IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in olfactory behavior IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in olfactory behavior IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to odorant IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in response to odorant IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in sensory perception of smell NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in axon IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in axon IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in external side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in neuron projection IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in neuronal cell body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in neuronal cell body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Homolog of Odr-2 (Two);Protein quiver;Protein sleepless
    NP_001024089.1
    • Confirmed by transcript evidence
    NP_001024090.1
    • Confirmed by transcript evidence
    NP_001380092.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      7103547..7114439
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001392541.1 → NP_001380092.1  Homolog of Odr-2 (Two) [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q94294, Q9BMI0
      Conserved Domains (1) summary
      pfam06579
      Location:58 → 180
      Ly-6_related; Caenorhabditis elegans ly-6-related protein

    2. NM_001028919.5 → NP_001024090.1  Protein quiver [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001024090.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9BMH9
      Conserved Domains (1) summary
      pfam06579
      Location:34 → 155
      Ly-6_related; Caenorhabditis elegans ly-6-related protein

    3. NM_001028918.4 → NP_001024089.1  Protein sleepless [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001024089.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EEC7
      Conserved Domains (1) summary
      pfam06579
      Location:30 → 151
      Ly-6_related; Caenorhabditis elegans ly-6-related protein
    Nucleotide Protein
    Heading Accession and Version

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