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    Y105C5B.9 Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog [ Caenorhabditis elegans ]

    Gene ID: 178445, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y105C5B.9
    Official Full Name
    Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog
    Primary source
    WormBase:WBGene00013650
    Locus tag
    CELE_Y105C5B.9
    See related
    AllianceGenome:WB:WBGene00013650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable dioxygenase activity and metal ion binding activity. Orthologous to human PHYHD1 (phytanoyl-CoA dioxygenase domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y105C5B.9 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    3
    Sequence:
    Chromosome: IV; NC_003282.8 (15930581..15931816)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-Asp Neighboring gene tRNA-Asp Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog
    NP_502898.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      15930581..15931816
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_070497.4 → NP_502898.1  Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502898.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9NAM7
      Conserved Domains (1) summary
      pfam05721
      Location:8 → 255
      PhyH; Phytanoyl-CoA dioxygenase (PhyH)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9NAM7.1

    Gene LinkOut

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