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    mrps-28 Mitochondrial Ribosomal Protein, Small [ Caenorhabditis elegans ]

    Gene ID: 180287, updated on 9-Dec-2024

    Summary

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    Official Symbol
    mrps-28
    Official Full Name
    Mitochondrial Ribosomal Protein, Small
    Primary source
    WormBase:WBGene00012830
    Locus tag
    CELE_Y43F8C.8
    See related
    AllianceGenome:WB:WBGene00012830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 47. Orthologous to human MRPS28 (mitochondrial ribosomal protein S28). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See mrps-28 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    3
    Sequence:
    Chromosome: V; NC_003283.11 (19644239..19645676)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Chromatin complexes subunit BAP18;SANT domain-containing protein Neighboring gene ER membrane protein complex subunit 10 Neighboring gene ncRNA Neighboring gene MS Related Protein Neighboring gene Doublesex- and mab-3-related transcription factor dmd-3 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of mitochondrial small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Mitochondrial Ribosomal Protein, Small
    NP_507808.1
    • Product from WormBase gene class mrps;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      19644239..19645676
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_075407.8 → NP_507808.1  Mitochondrial Ribosomal Protein, Small [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_507808.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XWP0
      Conserved Domains (1) summary
      pfam10246
      Location:42 → 145
      MRP-S35; Mitochondrial ribosomal protein MRP-S35
    Nucleotide Protein
    Heading Accession and Version

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