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    Tceal9 transcription elongation factor A like 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 680354, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tceal9provided by RGD
    Official Full Name
    transcription elongation factor A like 9provided by RGD
    Primary source
    RGD:1592975
    See related
    EnsemblRapid:ENSRNOG00000034198 AllianceGenome:RGD:1592975
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Wbp5; RGD1560111
    Summary
    Orthologous to human TCEAL9 (transcription elongation factor A like 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 1757.9), Lung (RPKM 699.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tceal9 in Genome Data Viewer
    Location:
    Xq32
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (104037274..104039345)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (99245645..99247720)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (106791333..106794667)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134484140 Neighboring gene programmed cell death 6, pseudogene 1 Neighboring gene small nuclear ribonucleoprotein polypeptide C, pseudogene 9 Neighboring gene brain expressed X-linked 3 Neighboring gene developmental pluripotency-associated 4, pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FBP WW domains and the Abl SH3 domain bind to a specific class of proline-rich ligands. Bedford MT, et al. EMBO J, 1997 May 1. PMID 9171351, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC188857

    General protein information

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    Preferred Names
    transcription elongation factor A protein-like 9
    Names
    WW domain-binding protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127502.2 → NP_001120974.1  transcription elongation factor A protein-like 9

      See identical proteins and their annotated locations for NP_001120974.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A0A8I5ZNB4, B2RYT6
      Related
      ENSRNOP00000050036.3, ENSRNOT00000050302.6
      Conserved Domains (1) summary
      pfam04538
      Location:44 → 102
      BEX; Brain expressed X-linked like family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      104037274..104039345
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006257281.4 → XP_006257343.1  transcription elongation factor A protein-like 9 isoform X1

      See identical proteins and their annotated locations for XP_006257343.1

      UniProtKB/TrEMBL
      A0A8I5ZNB4, B2RYT6
      Related
      ENSRNOP00000104384.1, ENSRNOT00000137566.1
      Conserved Domains (1) summary
      pfam04538
      Location:44 → 102
      BEX; Brain expressed X-linked like family

    2. XM_008773438.3 → XP_008771660.1  transcription elongation factor A protein-like 9 isoform X1

      See identical proteins and their annotated locations for XP_008771660.1

      UniProtKB/TrEMBL
      A0A8I5ZNB4, B2RYT6
      Related
      ENSRNOP00000079799.1, ENSRNOT00000110789.2
      Conserved Domains (1) summary
      pfam04538
      Location:44 → 102
      BEX; Brain expressed X-linked like family
    Nucleotide Protein Strain
    Heading Accession and Version

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