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    Fra10ac1 FRA10A associated CGG repeat 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 365458, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Fra10ac1provided by RGD
    Official Full Name
    FRA10A associated CGG repeat 1provided by RGD
    Primary source
    RGD:1309482
    See related
    EnsemblRapid:ENSRNOG00000015235 AllianceGenome:RGD:1309482
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309482
    Summary
    Predicted to enable phosphatase activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Orthologous to human FRA10AC1 (FRA10A associated CGG repeat 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 36.6), Kidney (RPKM 30.6) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fra10ac1 in Genome Data Viewer
    Location:
    1q53
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (245381538..245413879, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (235969071..236001074, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (256881688..256913617, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene retinol binding protein 4 Neighboring gene phosphodiesterase 6C Neighboring gene RGD1561251 Neighboring gene uncharacterized LOC134483993

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC109644

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables phosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA splicing, via spliceosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    protein FRA10AC1 homolog
    Names
    fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014246.1 → NP_001014268.1  protein FRA10AC1 homolog

      See identical proteins and their annotated locations for NP_001014268.1

      Status: PROVISIONAL

      Source sequence(s)
      BC090036
      UniProtKB/Swiss-Prot
      Q5FVF1
      Related
      ENSRNOP00000020620.7, ENSRNOT00000020620.8
      Conserved Domains (1) summary
      pfam09725
      Location:104 → 216
      Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      245381538..245413879 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063269970.1 → XP_063126040.1  protein FRA10AC1 homolog isoform X7

      UniProtKB/TrEMBL
      A0A8I6GIK3, A6I184
      Related
      ENSRNOP00000090840.1, ENSRNOT00000110182.2

    2. XM_039085664.2 → XP_038941592.1  protein FRA10AC1 homolog isoform X6

      UniProtKB/TrEMBL
      A0A8I5ZMA6
      Conserved Domains (1) summary
      pfam09725
      Location:104 → 216
      Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

    3. XM_008760372.4 → XP_008758594.1  protein FRA10AC1 homolog isoform X4

      UniProtKB/TrEMBL
      A6I184
      Conserved Domains (1) summary
      pfam09725
      Location:111 → 216
      Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

    4. XM_039085649.2 → XP_038941577.1  protein FRA10AC1 homolog isoform X3

      UniProtKB/TrEMBL
      A6I184
      Conserved Domains (1) summary
      pfam09725
      Location:111 → 216
      Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

    5. XM_008760371.4 → XP_008758593.1  protein FRA10AC1 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8L2QAE0
      Related
      ENSRNOP00000079231.2, ENSRNOT00000095503.2
      Conserved Domains (1) summary
      pfam09725
      Location:111 → 223
      Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

    6. XM_039085637.2 → XP_038941565.1  protein FRA10AC1 homolog isoform X1

      Conserved Domains (1) summary
      pfam09725
      Location:111 → 223
      Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

    7. XM_039085661.2 → XP_038941589.1  protein FRA10AC1 homolog isoform X5

      Related
      ENSRNOP00000099843.1, ENSRNOT00000121443.1
      Conserved Domains (1) summary
      pfam09725
      Location:107 → 219
      Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

    8. XM_039085669.2 → XP_038941597.1  protein FRA10AC1 homolog isoform X9

      UniProtKB/TrEMBL
      A6I184
      Conserved Domains (1) summary
      pfam09725
      Location:111 → 216
      Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

    9. XM_039085666.2 → XP_038941594.1  protein FRA10AC1 homolog isoform X8

      Conserved Domains (1) summary
      pfam09725
      Location:111 → 223
      Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

    10. XM_063269976.1 → XP_063126046.1  protein FRA10AC1 homolog isoform X10

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5FVF1.1 GenPept UniProtKB/Swiss-Prot:Q5FVF1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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