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    rpl502 60S ribosomal protein L5 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539680, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rpl502
    Official Full Name
    60S ribosomal protein L5
    Primary source
    PomBase:SPBC11C11.09c
    Locus tag
    SPOM_SPBC11C11.09C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    rpl5-2; rpl5b
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    Genomic context

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    See rpl502 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (3364710..3365644, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene 60S ribosomal protein L18 Neighboring gene pre-mRNA-splicing factor srp1 Neighboring gene ncRNA Neighboring gene tRNA pseudouridine synthase Neighboring gene ncRNA Neighboring gene ATP-dependent DNA helicase Irc3 Neighboring gene RNA polymerase I transcription factor subunit Rrn6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of Csh3 as an SH3 protein that interacts with fission yeast Cap1. Yamamoto T, et al. FEMS Yeast Res, 2015 Dec. PMID 26542710
    2. A Two-step Protein Quality Control Pathway for a Misfolded DJ-1 Variant in Fission Yeast. Mathiassen SG, et al. J Biol Chem, 2015 Aug 21. PMID 26152728, Free PMC Article
    3. Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome. Telekawa C, et al. Nucleic Acids Res, 2018 Nov 30. PMID 30321377, Free PMC Article
    4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables 5S rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoplasmic translation ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in ribosomal large subunit assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    60S ribosomal protein L5

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      3364710..3365644 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022319.3 → NP_596399.1  60S ribosomal protein L5 [Schizosaccharomyces pombe]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O74306, Q76N21
      Conserved Domains (3) summary
      PTZ00069
      Location:1 → 291
      PTZ00069; 60S ribosomal protein L5; Provisional
      pfam00861
      Location:26 → 173
      Ribosomal_L18p; Ribosomal L18p/L5e family
      pfam14204
      Location:193 → 283
      Ribosomal_L18_c; Ribosomal L18 C-terminal region
    Nucleotide Protein
    Heading Accession and Version

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