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    H2-T-ps histocompatibility 2, T region locus, pseudogene [ Mus musculus (house mouse) ]

    Gene ID: 667803, updated on 17-Aug-2024

    Summary

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    Official Symbol
    H2-T-psprovided by MGI
    Official Full Name
    histocompatibility 2, T region locus, pseudogeneprovided by MGI
    Primary source
    MGI:MGI:2442805
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    T11; T10c; H-2T11; H2-T11; H2-T11-ps; C920025E04Rik
    Expression
    Biased expression in liver adult (RPKM 45.7), thymus adult (RPKM 27.1) and 14 other tissues See more
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    Genomic context

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    See H2-T-ps in Genome Data Viewer
    Location:
    17 B1; 17 18.93 cM
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (36419469..36422581, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (36109030..36111723, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene histocompatibility 2, blastocyst Neighboring gene STARR-seq mESC enhancer starr_42485 Neighboring gene STARR-seq mESC enhancer starr_42486 Neighboring gene predicted gene, 54002 Neighboring gene ribosomal protein S6 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E10950 Neighboring gene histocompatibility 2, T region locus 10 Neighboring gene STARR-positive B cell enhancer ABC_E169 Neighboring gene histocompatibility-2, T region locus 25

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Analysis of MHC class I gene expression in adult bone marrow and fetal liver of the BALB/c mouse. Cheroutre H, et al. J Immunol, 1991 May 15. PMID 2026867
    2. Comparative structure of two duplicated T1a class I genes (T10c and 37) of the murine H-2d MHC. Implications on the evolution of the T1a region. Nakayama K, et al. J Immunol, 1990 Mar 15. PMID 1968929
    3. Polymorphism and conservation of the genes encoding Qa1 molecules. Hermel E, et al. Immunogenetics, 2004 Dec. PMID 15517242
    4. Isolation of a retroviruslike sequence from the TL locus of the C57BL/10 murine major histocompatibility complex. Pampeno CL, et al. J Virol, 1986 May. PMID 3701921, Free PMC Article
    5. Extension of the H-2 TLb molecular map. Isolation and characterization of T13, T14, and T15 from the C57BL/6 mouse. Brown GD, et al. Immunogenetics, 1988. PMID 2831142

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Other Names

    • histocompatibility 2, T region locus 11, pseudogene

    Clone Names

    • MGC102517

    General protein information

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    Preferred Names
    H-2 class I histocompatibility antigen-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_004801.4 

      Range
      101..3213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      36419469..36422581 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001271005.2: Suppressed sequence

      Description
      NM_001271005.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein Strain
    Heading Accession and Version

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