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    LOC101927164 uncharacterized LOC101927164 [ Homo sapiens (human) ]

    Gene ID: 101927164, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC101927164
    Gene description
    uncharacterized LOC101927164
    See related
    Ensembl:ENSG00000237101
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in skin (RPKM 13.2), placenta (RPKM 1.2) and 14 other tissues See more
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    Genomic context

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    See LOC101927164 in Genome Data Viewer
    Location:
    1q42.11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (224219613..224228043)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (223408530..223416964)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (224407315..224415745)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:224370121-224370951 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:224370952-224371781 Neighboring gene Sharpr-MPRA regulatory region 9300 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2602 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1850 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2603 Neighboring gene delta 4-desaturase, sphingolipid 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1851 Neighboring gene uncharacterized LOC101927143 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_5412 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:224402200-224402893 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:224405308-224405505 Neighboring gene nuclear VCP like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2604 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:224442412-224443337 Neighboring gene Sharpr-MPRA regulatory region 1236 Neighboring gene microRNA 320b-2 Neighboring gene MPRA-validated peak721 silencer Neighboring gene RNA, U6 small nuclear 1008, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110668.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092809, BC039513
      Related
      ENST00000420350.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      224219613..224228043
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      223408530..223416964
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials