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    LOC100136778 K18, simple type I keratin [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 100136778, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100136778
    Gene description
    K18, simple type I keratin
    See related
    Ensembl:ENSOMYG00000003109
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
    Also known as
    krt18
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    Genomic context

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    See LOC100136778 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current USDA_OmykA_1.1 (GCF_013265735.2) 9 NC_048573.1 (68854564..68861086)
    100 previous assembly Omyk_1.0 (GCF_002163495.1) 9 NC_035085.1 (61020629..61027207)

    Chromosome 9 - NC_048573.1Genomic Context describing neighboring genes Neighboring gene type II keratin E1 Neighboring gene simple type II keratin K8b (S2) Neighboring gene keratin, type I cytoskeletal 18 Neighboring gene eukaryotic translation initiation factor 4B-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tracing keratin evolution: catalog, expression patterns and primary structure of shark (Scyliorhinus stellaris) keratins. Schaffeld M, et al. Eur J Cell Biol, 1998 Oct. PMID 9840456
    2. Type I keratin cDNAs from the rainbow trout: independent radiation of keratins in fish. Schaffeld M, et al. Differentiation, 2002 Aug. PMID 12190989
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intermediate filament cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in keratin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    keratin, type I cytoskeletal 18
    Names
    CK-18
    cytokeratin-18
    keratin-18
    simple type I keratin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001124724.1 → NP_001118196.1  keratin, type I cytoskeletal 18

      See identical proteins and their annotated locations for NP_001118196.1

      Status: PROVISIONAL

      Source sequence(s)
      Y14289
      UniProtKB/Swiss-Prot
      O57607
      UniProtKB/TrEMBL
      A0A8C7LYN8
      Related
      ENSOMYP00000006121.1, ENSOMYT00000006800.2
      Conserved Domains (2) summary
      pfam00038
      Location:88 → 399
      Filament; Intermediate filament protein
      pfam07106
      Location:304 → 392
      TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)

    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_OmykA_1.1 Primary Assembly

    Genomic

    1. NC_048573.1 Reference USDA_OmykA_1.1 Primary Assembly

      Range
      68854564..68861086
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O57607.1 GenPept UniProtKB/Swiss-Prot:O57607

    Gene LinkOut

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