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    TBPL1 TATA-box binding protein like 1 [ Gallus gallus (chicken) ]

    Gene ID: 395517, updated on 17-Aug-2024

    Summary

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    Symbol
    TBPL1provided by CGNC
    Full Name
    TATA-box binding protein like 1provided by CGNC
    Primary source
    CGNC:10450
    See related
    Ensembl:ENSGALG00010006173
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    TBP; TLP
    Orthologs
    human mouse all
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    Genomic context

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    See TBPL1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (55933140..55946112, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (55841409..55854385, complement)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene serum/glucocorticoid regulated kinase 1 Neighboring gene uncharacterized LOC107052995 Neighboring gene solute carrier family 2 member 12 Neighboring gene transcription factor 21 Neighboring gene uncharacterized LOC121110364

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the chicken TBP-like protein(tlp) gene: evidence for a striking conservation of vertebrate TLPs and for a close relationship between vertebrate tbp and tlp genes. Shimada M, et al. Nucleic Acids Res, 1999 Aug 1. PMID 10454611, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TATA box-binding protein-like 1
    Names
    TATA box-binding protein-like protein 1
    TBP-like 1
    TBP-like factor
    TBP-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204755.1 → NP_990086.1  TATA box-binding protein-like 1

      See identical proteins and their annotated locations for NP_990086.1

      Status: PROVISIONAL

      Source sequence(s)
      AB024489
      UniProtKB/Swiss-Prot
      Q9YGV8
      Conserved Domains (1) summary
      cd04517
      Location:9 → 180
      TLF; TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the ...

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      55933140..55946112 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015284012.4 → XP_015139498.1  TATA box-binding protein-like 1 isoform X1

      UniProtKB/Swiss-Prot
      Q9YGV8
      Conserved Domains (1) summary
      cd04517
      Location:9 → 180
      TLF; TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the ...

    2. XM_046938422.1 → XP_046794378.1  TATA box-binding protein-like 1 isoform X1

      UniProtKB/Swiss-Prot
      Q9YGV8
      Related
      ENSGALP00010008656.1, ENSGALT00010014701.1

    3. XM_015284010.4 → XP_015139496.1  TATA box-binding protein-like 1 isoform X1

      UniProtKB/Swiss-Prot
      Q9YGV8
      Conserved Domains (1) summary
      cd04517
      Location:9 → 180
      TLF; TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the ...

    4. XM_015284011.4 → XP_015139497.1  TATA box-binding protein-like 1 isoform X1

      UniProtKB/Swiss-Prot
      Q9YGV8
      Conserved Domains (1) summary
      cd04517
      Location:9 → 180
      TLF; TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the ...

    5. XM_040696763.2 → XP_040552697.1  TATA box-binding protein-like 1 isoform X1

      UniProtKB/Swiss-Prot
      Q9YGV8
      Conserved Domains (1) summary
      cd04517
      Location:9 → 180
      TLF; TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the ...

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      55841409..55854385 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046912992.1 → XP_046768948.1  TATA box-binding protein-like 1 isoform X1

      UniProtKB/Swiss-Prot
      Q9YGV8

    2. XM_046912997.1 → XP_046768953.1  TATA box-binding protein-like 1 isoform X1

      UniProtKB/Swiss-Prot
      Q9YGV8

    3. XM_046912991.1 → XP_046768947.1  TATA box-binding protein-like 1 isoform X1

      UniProtKB/Swiss-Prot
      Q9YGV8

    4. XM_046912994.1 → XP_046768950.1  TATA box-binding protein-like 1 isoform X1

      UniProtKB/Swiss-Prot
      Q9YGV8

    5. XM_046912995.1 → XP_046768951.1  TATA box-binding protein-like 1 isoform X1

      UniProtKB/Swiss-Prot
      Q9YGV8

    6. XM_046912996.1 → XP_046768952.1  TATA box-binding protein-like 1 isoform X1

      UniProtKB/Swiss-Prot
      Q9YGV8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9YGV8.1 GenPept UniProtKB/Swiss-Prot:Q9YGV8

    Gene LinkOut

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