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    rpl30 ribosomal protein L30 [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 100304544, updated on 8-Mar-2024

    Summary

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    Gene symbol
    rpl30
    Gene description
    ribosomal protein L30
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Orthologs
    human zebrafish all
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    Genomic context

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    See rpl30 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Coco_2.0 (GCF_001660625.3) 24 NC_030439.2 (14708386..14711327)
    101 previous assembly IpCoco_1.2 (GCF_001660625.2) 24 NC_030439.1 (12632717..12635738)

    Chromosome 24 - NC_030439.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108256933 Neighboring gene reactive intermediate imine deaminase A homolog Neighboring gene lysosomal protein transmembrane 4 beta Neighboring gene metadherin a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Translational machinery of channel catfish: II. Complementary DNA and expression of the complete set of 47 60S ribosomal proteins. Patterson A, et al. Gene, 2003 Feb 27. PMID 12609735
    2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein eL30; 60S ribosomal protein L30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001200126.2 → NP_001187055.1  large ribosomal subunit protein eL30

      See identical proteins and their annotated locations for NP_001187055.1

      Status: PROVISIONAL

      Source sequence(s)
      AF401585
      UniProtKB/Swiss-Prot
      P58372
      Conserved Domains (1) summary
      PTZ00106
      Location:2 → 107
      PTZ00106; 60S ribosomal protein L30; Provisional

    RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coco_2.0 Primary Assembly

    Genomic

    1. NC_030439.2 Reference Coco_2.0 Primary Assembly

      Range
      14708386..14711327
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017453924.3 → XP_017309413.1  60S ribosomal protein L30 isoform X1

      UniProtKB/TrEMBL
      A0A2D0PS76
      Conserved Domains (1) summary
      PTZ00106
      Location:2 → 107
      PTZ00106; 60S ribosomal protein L30; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P58372.2 GenPept UniProtKB/Swiss-Prot:P58372

    Gene LinkOut

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