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    CCT6A chaperonin containing TCP1 subunit 6A [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100008688, updated on 17-Dec-2024

    Summary

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    Gene symbol
    CCT6A
    Gene description
    chaperonin containing TCP1 subunit 6A
    See related
    Ensembl:ENSOCUG00000017674
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Also known as
    CCT6; CCT6B
    Orthologs
    human mouse all
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    Genomic context

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    See CCT6A in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_11 current mOryCun1.1 (GCF_964237555.1) 19 NC_091450.1 (65892696..65903900)
    RS_2023_02 previous assembly UM_NZW_1.0 (GCF_009806435.1) Unplaced Scaffold NW_026259229.1 (288931..299194)

    Chromosome 19 - NC_091450.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC138847078 Neighboring gene nipsnap homolog 2 Neighboring gene phosphoserine phosphatase Neighboring gene ras-specific guanine nucleotide-releasing factor RalGPS2-like Neighboring gene small nucleolar RNA SNORA22 Neighboring gene small nucleolar RNA SNORA15 Neighboring gene sulfatase modifying factor 2 Neighboring gene phosphorylase kinase catalytic subunit gamma 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning of rabbit Cct6 and the distribution of the Cct complex in mammalian tissues. Schwartz GJ, et al. Exp Nephrol, 2000 May-Jun. PMID 10810232
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chaperonin-containing T-complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-complex protein 1 subunit zeta
    Names
    CCT-zeta
    TCP-1-zeta
    chaperonin Cct6
    chaperonin containing TCP1, subunit 6A (zeta 1)
    chaperonin containing TCP1, subunit 6B (zeta 2)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001082039.1 → NP_001075508.1  T-complex protein 1 subunit zeta

      See identical proteins and their annotated locations for NP_001075508.1

      Status: PROVISIONAL

      Source sequence(s)
      AF068483
      UniProtKB/Swiss-Prot
      O77622
      UniProtKB/TrEMBL
      A0A5F9DQS0
      Related
      ENSOCUP00000015180.2, ENSOCUT00000017675.3
      Conserved Domains (2) summary
      cd03342
      Location:7 → 526
      TCP1_zeta; TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL) ...
      TIGR02347
      Location:3 → 530
      chap_CCT_zeta; T-complex protein 1, zeta subunit

    RefSeqs of Annotated Genomes: GCF_964237555.1-RS_2024_11

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mOryCun1.1

    Genomic

    1. NC_091450.1 Reference mOryCun1.1

      Range
      65892696..65903900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_070063720.1 → XP_069919821.1  T-complex protein 1 subunit zeta isoform X1

      UniProtKB/TrEMBL
      A0A5F9DQS0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O77622.3 GenPept UniProtKB/Swiss-Prot:O77622

    Gene LinkOut

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