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    CG1647 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43401, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG1647provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0039602
    Locus tag
    Dmel_CG1647
    See related
    AllianceGenome:FB:FBgn0039602
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG1647
    Summary
    Predicted to enable chromatin insulator sequence binding activity and transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in chromosome. Is expressed in dorsal pharyngeal muscle cell; embryonic/larval midgut; larval muscle system; and organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG1647 in Genome Data Viewer
    Location:
    98E5-98E5; 3-97 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (28820221..28824508)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (24645943..24650230)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pre-mRNA processing factor 39 Neighboring gene uncharacterized protein Neighboring gene WASp Neighboring gene APC-like Neighboring gene sponge Neighboring gene Innexin 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Innexin 3, a new gene required for dorsal closure in Drosophila embryo. Giuliani F, et al. PLoS One, 2013. PMID 23894431, Free PMC Article
    2. Control of Cell Growth and Proliferation by the Tribbles Pseudokinase: Lessons from Drosophila. Dobens LL, et al. Cancers (Basel), 2021 Feb 20. PMID 33672471, Free PMC Article
    3. An RNA-interference screen in Drosophila to identify ZAD-containing C2H2 zinc finger genes that function in female germ cells. Shapiro-Kulnane L, et al. G3 (Bethesda), 2021 Jan 18. PMID 33561227, Free PMC Article
    4. ZAD-Domain Is Essential for Nuclear Localization of Insulator Proteins in Drosophila melanogaster. Zolotarev NA, et al. Acta Naturae, 2016 Jul-Sep. PMID 27795848, Free PMC Article
    5. Innovation of heterochromatin functions drives rapid evolution of essential ZAD-ZNF genes in Drosophila. Kasinathan B, et al. Elife, 2020 Nov 10. PMID 33169670, Free PMC Article

    See all (28) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables chromatin insulator sequence binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables transcription cis-regulatory region binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in chromosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG1647-PA
    CG1647-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      28820221..28824508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143379.3 → NP_651636.1  uncharacterized protein Dmel_CG1647, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651636.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VAT1
      Related
      FBpp0084695
      Conserved Domains (2) summary
      sd00017
      Location:233 → 253
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam07776
      Location:19 → 99
      zf-AD; Zinc-finger associated domain (zf-AD)

    2. NM_001276115.1 → NP_001263044.1  uncharacterized protein Dmel_CG1647, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001263044.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KH87
      Conserved Domains (2) summary
      sd00017
      Location:229 → 249
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam07776
      Location:19 → 95
      zf-AD; Zinc-finger associated domain (zf-AD)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4KH87 A0A0B4KH87
    Q9VAT1 Q9VAT1

    Gene LinkOut

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