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    CG3335 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39119, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG3335provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0036018
    Locus tag
    Dmel_CG3335
    See related
    AllianceGenome:FB:FBgn0036018
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    cg3335; Dm-RBD-1; Dmel\CG3335; Q9VT19
    Summary
    Predicted to enable mRNA binding activity. Predicted to be active in nuclear speck and nucleolus. Is expressed in spermatozoon. Orthologous to human RBM19 (RNA binding motif protein 19). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG3335 in Genome Data Viewer
    Location:
    67C2-67C2; 3-31 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (9624237..9627321)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (9617337..9620421)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Transmembrane channel-like Neighboring gene uncharacterized protein Neighboring gene Laminin B2 Neighboring gene Odorant receptor 67b Neighboring gene Cyclophilin 40 Neighboring gene furry Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel conserved RNA-binding domain protein, RBD-1, is essential for ribosome biogenesis. Björk P, et al. Mol Biol Cell, 2002 Oct. PMID 12388766, Free PMC Article
    2. Modulated modularity clustering as an exploratory tool for functional genomic inference. Stone EA, et al. PLoS Genet, 2009 May. PMID 19424432, Free PMC Article
    3. Identification of Drosophila centromere associated proteins by quantitative affinity purification-mass spectrometry. Barth TK, et al. Data Brief, 2015 Sep. PMID 26306323, Free PMC Article
    4. Identification of Evolutionarily Conserved Nuclear Matrix Proteins and Their Prokaryotic Origins. Sureka R, et al. J Proteome Res, 2021 Jan 1. PMID 33289389
    5. The genetics of egg retention and fertilization success in Drosophila: One step closer to understanding the transition from facultative to obligate viviparity. Horváth B, et al. Evolution, 2018 Feb. PMID 29265369

    See all (31) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in nuclear speck IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG3335-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      9624237..9627321
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_140080.2 → NP_648337.1  uncharacterized protein Dmel_CG3335 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648337.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8MYR4, Q9VT19
      Related
      FBpp0076112
      Conserved Domains (7) summary
      COG0724
      Location:638 → 845
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12318
      Location:679 → 760
      RRM5_RBM19_like; RNA recognition motif 5 in RNA-binding protein 19 (RBM19 or RBD-1) and similar proteins
      cd12564
      Location:2 → 77
      RRM1_RBM19; RNA recognition motif 1 in RNA-binding protein 19 (RBM19) and similar proteins
      cd12567
      Location:362 → 440
      RRM3_RBM19; RNA recognition motif 3 in RNA-binding protein 19 (RBM19) and similar proteins
      cd12569
      Location:552 → 623
      RRM4_RBM19; RNA recognition motif 4 in RNA-binding protein 19 (RBM19) and similar proteins
      cd12571
      Location:785 → 864
      RRM6_RBM19; RNA recognition motif 6 in RNA-binding protein 19 (RBM19) and similar proteins
      cl17169
      Location:250 → 314
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8MYR4 Q8MYR4
    Q9VT19 Q9VT19

    Gene LinkOut

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